; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0019966 (gene) of Snake gourd v1 genome

Gene IDTan0019966
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSWIB domain-containing protein
Genome locationLG03:17328977..17343564
RNA-Seq ExpressionTan0019966
SyntenyTan0019966
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TKY46953.1 Upstream activation factor subunit spp27 [Spatholobus suberectus]2.2e-4594Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDP NKNVV CDEKLKSILLGKP VELAELPALIKLHFPK PK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]2.2e-4593Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDPTNKNVV+CDEKLKSILLGKP VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]4.8e-4594Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK+NNLQDPTNKNVVICDEKLKSILLGK  +ELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
XP_027343910.1 upstream activation factor subunit spp27 [Abrus precatorius]2.2e-4594Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDP NKNVV CDEKLKSILLGKP VELAELPALIKLHFPK PK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]1.4e-4797Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLP+RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDPTNKNVVICDEKLKSILLGKP VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
TrEMBL top hitse value%identityAlignment
A0A151SBL4 Upstream activation factor subunit UAF305.2e-4591Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDP NKNVV CDEKLKSILLGKP V+LAELPALIK+HFPK PK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
A0A1S3BL41 upstream activation factor subunit spp271.0e-4593Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDPTNKNVV+CDEKLKSILLGKP VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
A0A6J1ELR1 upstream activation factor subunit UAF302.3e-4594Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK+NNLQDPTNKNVVICDEKLKSILLGK  +ELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
A0A6J1HWJ0 protein TRI1 isoform X14.0e-4594Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK+NNLQDPTNKNVVICDEKL+SILLGK  VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
A0A6J1HY33 upstream activation factor subunit UAF30 isoform X24.0e-4594Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK+NNLQDPTNKNVVICDEKL+SILLGK  VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp278.3e-0846.15Show/hide
Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSI
        + L   L EF+G  Q+SR    K +W YIK+++LQDP +K  ++CD+KLKS+
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSI
Q05024 Protein TRI12.0e-0632.47Show/hide
Query:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPM
        + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++  ++CDEK++ I  GK M
Subjt:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPM
Q08747 Upstream activation factor subunit UAF305.4e-0733.77Show/hide
Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        V L  +L   +G+ +++R    + +W+YIK++NLQ+P NK  ++CDEKL+ ++LGK    + E+  ++  H  +  K
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein4.4e-1243.48Show/hide
Query:  LREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKN
        L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK  V + E+  L+  HFPK+
Subjt:  LREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKN
AT2G35605.1 SWIB/MDM2 domain superfamily protein7.2e-1541.77Show/hide
Query:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKN
        ++ +V +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK  V   E+  L+  HFPK+
Subjt:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKN
AT4G26810.1 SWIB/MDM2 domain superfamily protein1.6e-4385Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIK+NNLQDP NKNVVICDEKLKSILLGK  VEL +LP+LIKLHFPK  K
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
AT4G26810.2 SWIB/MDM2 domain superfamily protein1.6e-4385Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
        MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIK+NNLQDP NKNVVICDEKLKSILLGK  VEL +LP+LIKLHFPK  K
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
AT4G34290.1 SWIB/MDM2 domain superfamily protein6.3e-1145.45Show/hide
Query:  LREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHF
        +++ VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK  V   E+  LI  HF
Subjt:  LREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCACAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACCTCATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAATTTGTAGGACAGTC
CCAAATTTCTCGGTTGGGCTGCTTCAAGTGCGTATGGTCATATATCAAAAGCAACAATCTTCAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAGAAGTTAAAGA
GTATATTGCTAGGCAAGCCCATGGTTGAGCTAGCCGAACTTCCTGCACTGATTAAGTTGCATTTTCCCAAAAACCCCAAGTGA
mRNA sequenceShow/hide mRNA sequence
CCCCCATCCCCTTCATCTTCTACAACTTCAACCACACCTCCCATCTTCGCGTGAAACGAGCGCCGCCCATCCCTTTCTTCTCGACTTTCTTCTCTGACATCCTCTCCCTC
GTTTTCTTCTTCATCTCGTAGACCCACGACTCCGGCAACGACACACACAAACGCACGCTCTCAACCCAGCAACGACAGAATCGCGATGGCGGCGCAGCAGAGGATCGACG
CGAGGTTCGGTAGGCAGAGCAATGCACGGTGACGTCTTCCTCAACGTGTTTGGCTTGAGATTGTTCGAGCATCAACGTTCCCCTTCTTTACGGCTCGCTCGGACGTCGAC
CTGCCACTTTAGAGGTCGTTTGGTGCTAAATCCACGTTTTCCAGCAAGACCCACTCAGTTTTGAATTTGAGAATCTCTTCTATTCGTGTTTCTCAACTCGTTTTGGTCTA
GAATCGATTACCTATTGACTGTGAGAATCTATTCGAACACCTTTGAATAGCAAACAACAAGTGTAATGGCTCTTTCGTTTCAACCCAATTAGATCTCATTCAAACACTCC
CAACATGTATTCGAGTCCATTTGGTGAAGTTTGTGGAAGGAGGAAGCAAACTAGTTGTGCAGAAGAATGCTGCCACAACGGATGAAGATGGCCATTACAGATAACCCAAA
GAAGCTTGCCAACCTCATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAATTTGTAGGACAGTCCCAAATTTCTCGGTTGGGCTGCTTCAAGTGCGTATGGTCATATA
TCAAAAGCAACAATCTTCAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCATGGTTGAGCTAGCCGAACTTCCT
GCACTGATTAAGTTGCATTTTCCCAAAAACCCCAAGTGAGTTGTGCTTGCAGTTTAACCTCTGACACCTCCCGGATGACTTCTTCAAGTAGCCAATGTCTCGAATGTTTT
GCCTCAATTTTGCATGATTGTCCTACCAGGTTTCCTTCACATATATTACCAGAAAATTATTTGACTTTTGCATAGAACATTTATTTAGCAATAGTGTCAGTTTAACTCTC
TTCTTTTGCCTCATGCCTTTTGTATATTATATATATATATATATATGGCTTCAC
Protein sequenceShow/hide protein sequence
MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK