; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0020030 (gene) of Snake gourd v1 genome

Gene IDTan0020030
OrganismTrichosanthes anguina (Snake gourd v1)
Description40S ribosomal protein S19
Genome locationLG06:8242646..8244673
RNA-Seq ExpressionTan0020030
SyntenyTan0020030
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.2e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_004141465.1 40S ribosomal protein S19-3 [Cucumis sativus]2.4e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_004148892.2 40S ribosomal protein S19-3 [Cucumis sativus]3.2e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYDADWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022923365.1 40S ribosomal protein S19-3-like [Cucurbita moschata]7.0e-7496.5Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]3.2e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

TrEMBL top hitse value%identityAlignment
A0A0A0KSI3 Uncharacterized protein1.2e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A1S3CB93 40S ribosomal protein S19-31.2e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A5A7T7J1 40S ribosomal protein S19-3-like1.2e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1H7M6 40S ribosomal protein S19-3-like1.5e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTW8 40S ribosomal protein S19-3-like1.5e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S195.8e-6381.43Show/hide
Query:  ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA
        +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYD DWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+
Subjt:  ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA

Query:  RHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVV
        R+ILQQLQ+M IIDVDPKGGR ITS GRRDLDQVAGR+ V
Subjt:  RHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVV

Q94613 40S ribosomal protein S199.3e-4556.72Show/hide
Query:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL
        +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+ DWY+IRAAS+ R +Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +L
Subjt:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL

Query:  QQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI
        Q L+ + I++ DP GGRR+TS GRRDLD++A +I
Subjt:  QQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI

Q9FNP8 40S ribosomal protein S19-31.7e-6784.51Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWYYIRAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ M+I+D+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVA

Q9LF30 40S ribosomal protein S19-28.7e-6786.33Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWYYIRAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ MSI+++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI

Q9SGA6 40S ribosomal protein S19-11.7e-6783.22Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWYYIRAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ M+I+++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein1.2e-6883.22Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWYYIRAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ M+I+++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

AT5G15520.1 Ribosomal protein S19e family protein6.2e-6886.33Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWYYIRAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ MSI+++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI

AT5G61170.1 Ribosomal protein S19e family protein1.2e-6884.51Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWYYIRAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ M+I+D+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTGCTAGGACAGTCAAGGATGTCTCTCCTCACGAGTTCGTGAAGGCCTATGCCGCTCATCTTAAGCGGTCGGGGAAGGTTGAACTTCCACCATGGACCGATAT
TGTTAAGACTGCAAGATTCAAAGAGCTTGCTCCCTATGATGCCGATTGGTATTACATAAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGCGTGG
GTGCATTTAAGCGTATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGCCACATTTTACAACAGTTGCAGGAG
ATGAGCATTATTGATGTTGACCCGAAGGGTGGAAGGAGAATTACTTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCCGGATTGTTGTTGCCCCTTGA
mRNA sequenceShow/hide mRNA sequence
CTCTTCGAAAACCCTAGAGATTGAGAAAGGCGGAAACCCTAGTTCTGCAATCGGAGCTCTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACAG
TCAAGGATGTCTCTCCTCACGAGTTCGTGAAGGCCTATGCCGCTCATCTTAAGCGGTCGGGGAAGGTTGAACTTCCACCATGGACCGATATTGTTAAGACTGCAAGATTC
AAAGAGCTTGCTCCCTATGATGCCGATTGGTATTACATAAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGCGTGGGTGCATTTAAGCGTATTTA
TGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGCCACATTTTACAACAGTTGCAGGAGATGAGCATTATTGATGTTG
ACCCGAAGGGTGGAAGGAGAATTACTTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCCGGATTGTTGTTGCCCCTTGATTGAACAATTACCTGTTTTGTTAATTA
GAGACATATGTTTTGCTGATGAGATACAATTTATTATGCGCCATTAAAATTTTGGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGGTTACTTATGTTTTCTCACGG
GTTTTGTTATATTTTTTTTTCTGGGGTTTTAAGATGATGGTGTTTCCAGTATTTTATCAACAATAACTTGATGCTTATTCTACAGAGTTGTTGCATTGAGAGATCCTTAC
TGTGGATGAAATTTTCTCTTTGCTATCTATTTTCCCATTTGTGTGAATTTGATCCAATCTGAAATTGCCCTTGGGACTTTGGGCGACTTAAATCAAAAAAACCCTTGCGA
GTTTTC
Protein sequenceShow/hide protein sequence
MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYIRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE
MSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP