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Tan0020036 (gene) of Snake gourd v1 genome

Gene IDTan0020036
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationLG02:11212489..11213744
RNA-Seq ExpressionTan0020036
SyntenyTan0020036
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0043186 - P granule (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR044641 - Sm-like protein Lsm7/SmG


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7804281.1 putative small nuclear ribonucleoprotein G [Senna tora]4.3e-0864.58Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQG
        GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ +N++QG
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQG
KAG6595179.1 putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. sororia]3.3e-0848.68Show/hide
Query:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
        G+P   + Y  KK+ +  N          GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ +N+MQ
Subjt:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]9.5e-0865.96Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
        GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ +N+MQ
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
XP_022962865.1 probable small nuclear ribonucleoprotein G [Cucurbita moschata]3.3e-0848.68Show/hide
Query:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
        G+P   + Y  KK+ +  N          GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ +N+MQ
Subjt:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
XP_023517274.1 probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]4.3e-0848.68Show/hide
Query:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
        G+P   + Y  KK+ +  N          GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ +N+MQ
Subjt:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
TrEMBL top hitse value%identityAlignment
A0A061EV54 Small nuclear ribonucleoprotein G4.6e-0868.09Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
        GFD FMN+V DNT+EVN N RT I M+VIRGNS+VTVE L+ + KMQ
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
A0A5D3C6A2 Small nuclear ribonucleoprotein G4.6e-0865.96Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
        GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ +N+MQ
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
A0A6J1ASP2 Small nuclear ribonucleoprotein G4.6e-0868.09Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
        GFD FMN+V DNT+EVN N RT I M+VIRGNS+VTVE L+ + KMQ
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
A0A6J1HGA2 Small nuclear ribonucleoprotein G1.6e-0848.68Show/hide
Query:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
        G+P   + Y  KK+ +  N          GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ +N+MQ
Subjt:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
A0A6J1I955 Small nuclear ribonucleoprotein G1.6e-0848.68Show/hide
Query:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
        G+P   + Y  KK+ +  N          GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ +N+MQ
Subjt:  GEP---ETYFHKKVLLYSNEG----CKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQ
SwissProt top hitse value%identityAlignment
O82221 Probable small nuclear ribonucleoprotein G1.5e-0862.22Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINK
        GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ + +
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINK
P24715 Probable small nuclear ribonucleoprotein G7.6e-0862.79Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHI
        GFD FMN+V DNT+EVN N +  I M+VIRGNS+VTVE L+ +
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHI
P62309 Small nuclear ribonucleoprotein G3.0e-0437.68Show/hide
Query:  EPETYFHKKVLLYSNEGCK----FHGFDPFMNIVADNTMEV-NRNRRTYISMMVIRGNSMVTVEVLQHI
        E + +  KK+ L  N G        GFDPFMN+V D  +E+    ++  I M+VIRGNS++ +E L+ +
Subjt:  EPETYFHKKVLLYSNEGCK----FHGFDPFMNIVADNTMEV-NRNRRTYISMMVIRGNSMVTVEVLQHI
Q3ZBL0 Small nuclear ribonucleoprotein G3.0e-0437.68Show/hide
Query:  EPETYFHKKVLLYSNEGCK----FHGFDPFMNIVADNTMEV-NRNRRTYISMMVIRGNSMVTVEVLQHI
        E + +  KK+ L  N G        GFDPFMN+V D  +E+    ++  I M+VIRGNS++ +E L+ +
Subjt:  EPETYFHKKVLLYSNEGCK----FHGFDPFMNIVADNTMEV-NRNRRTYISMMVIRGNSMVTVEVLQHI
Q9VXE0 Probable small nuclear ribonucleoprotein G2.4e-0643.48Show/hide
Query:  EPETYFHKKVLLYSNEGCK----FHGFDPFMNIVADNTM-EVNRNRRTYISMMVIRGNSMVTVEVLQHI
        E + Y  K+++L  N G        GFDPFMN+V D+T+ E   N +  I M+VIRGNS+V VE L  +
Subjt:  EPETYFHKKVLLYSNEGCK----FHGFDPFMNIVADNTM-EVNRNRRTYISMMVIRGNSMVTVEVLQHI
Arabidopsis top hitse value%identityAlignment
AT2G23930.1 probable small nuclear ribonucleoprotein G1.1e-0962.22Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINK
        GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ + +
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINK
AT2G23930.2 probable small nuclear ribonucleoprotein G1.1e-0962.22Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINK
        GFD FMN+V DNT+EVN N +T I M+VIRGNS+VTVE L+ + +
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINK
AT3G11500.1 Small nuclear ribonucleoprotein family protein4.1e-0960Show/hide
Query:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINK
        GFD FMN+V DNT+EVN + +T I M+VIRGNS+VTVE L+ + +
Subjt:  GFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTGGGGAGGGGAACCTGAAACCTATTTTCATAAAAAGGTTCTTTTATACTCTAATGAAGGATGCAAGTTTCATGGGTTTGACCCATTTATGAATATAGTGGCTGA
CAACACCATGGAAGTGAATAGAAATAGAAGAACTTATATTAGCATGATGGTTATTAGGGGCAATAGTATGGTCACCGTTGAAGTACTTCAACATATAAATAAGATGCAAG
GATGTAAGATTTGTTTGTATTTGGTTAAGTTCTTATTGATTTGTTTTATAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTGGGGAGGGGAACCTGAAACCTATTTTCATAAAAAGGTTCTTTTATACTCTAATGAAGGATGCAAGTTTCATGGGTTTGACCCATTTATGAATATAGTGGCTGA
CAACACCATGGAAGTGAATAGAAATAGAAGAACTTATATTAGCATGATGGTTATTAGGGGCAATAGTATGGTCACCGTTGAAGTACTTCAACATATAAATAAGATGCAAG
GATGTAAGATTTGTTTGTATTTGGTTAAGTTCTTATTGATTTGTTTTATAGATTAA
Protein sequenceShow/hide protein sequence
MLWGGEPETYFHKKVLLYSNEGCKFHGFDPFMNIVADNTMEVNRNRRTYISMMVIRGNSMVTVEVLQHINKMQGCKICLYLVKFLLICFID