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Tan0020110 (gene) of Snake gourd v1 genome

Gene IDTan0020110
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSWIM-type domain-containing protein
Genome locationLG03:17914130..17916082
RNA-Seq ExpressionTan0020110
SyntenyTan0020110
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN72555.1 hypothetical protein VITISV_015793 [Vitis vinifera]1.6e-1466.1Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSR
        YWPE  F I+HPN  L+R+ GR +SSRI NEMDWRE S K RCG+CK+EGHN R CP+R
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSR

KAA0044308.1 uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa]1.5e-1256.72Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSSH
        YWPE++F  + PN +LL+  GR +++RIHNEMDW+ES    RC ICK EGHN+RTCP R   +SS H
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSSH

RVW52006.1 hypothetical protein CK203_068088 [Vitis vinifera]1.8e-1565.15Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSS
        YWPE  F I+HPN NL+R+ GR +SSRI NEMDWRE S K RCG+CK+EGHN+R CP+R  G SS+
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSS

RVW87805.1 hypothetical protein CK203_044024 [Vitis vinifera]1.7e-1364.41Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSR
        YWPE  F I+ PN  L+R+ GR +SSRI NEMDWRE S K RCG+CK+EGHN R CP+R
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSR

RVX19406.1 hypothetical protein CK203_008540 [Vitis vinifera]1.8e-1565.15Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSS
        YWPE  F I+HPN NL+R+ GR +SSRI NEMDWRE S K RCG+CK+EGHN+R CP+R  G SS+
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSS

TrEMBL top hitse value%identityAlignment
A0A438EWG2 SWIM-type domain-containing protein8.9e-1665.15Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSS
        YWPE  F I+HPN NL+R+ GR +SSRI NEMDWRE S K RCG+CK+EGHN+R CP+R  G SS+
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSS

A0A438HTP0 Uncharacterized protein8.3e-1464.41Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSR
        YWPE  F I+ PN  L+R+ GR +SSRI NEMDWRE S K RCG+CK+EGHN R CP+R
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSR

A0A438KDW5 SWIM-type domain-containing protein8.9e-1665.15Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSS
        YWPE  F I+HPN NL+R+ GR +SSRI NEMDWRE S K RCG+CK+EGHN+R CP+R  G SS+
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSS

A0A5D3BS92 SWIM-type domain-containing protein7.0e-1356.72Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSSH
        YWPE++F  + PN +LL+  GR +++RIHNEMDW+ES    RC ICK EGHN+RTCP R   +SS H
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSSH

A5BP71 PMD domain-containing protein7.5e-1566.1Show/hide
Query:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSR
        YWPE  F I+HPN  L+R+ GR +SSRI NEMDWRE S K RCG+CK+EGHN R CP+R
Subjt:  YWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTATACGGAGATAACCCTAATCTCATACTATTGGCCAGAGATGACATTTGATATTCTTCATCCAAATAAAAACTTATTGAGGGAACATGGTCGATCAAAAAGTTC
TCGTATTCATAATGAGATGGATTGGAGAGAATCTAGTTCAAAATCGCGTTGTGGAATATGTAAGAGAGAAGGACATAACAAGCGTACTTGTCCCTCTCGTAACTTAGGGG
CATCTTCAAGTCATGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTATACGGAGATAACCCTAATCTCATACTATTGGCCAGAGATGACATTTGATATTCTTCATCCAAATAAAAACTTATTGAGGGAACATGGTCGATCAAAAAGTTC
TCGTATTCATAATGAGATGGATTGGAGAGAATCTAGTTCAAAATCGCGTTGTGGAATATGTAAGAGAGAAGGACATAACAAGCGTACTTGTCCCTCTCGTAACTTAGGGG
CATCTTCAAGTCATGGTTGA
Protein sequenceShow/hide protein sequence
MNYTEITLISYYWPEMTFDILHPNKNLLREHGRSKSSRIHNEMDWRESSSKSRCGICKREGHNKRTCPSRNLGASSSHG