; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0020141 (gene) of Snake gourd v1 genome

Gene IDTan0020141
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L16
Genome locationLG01:45289177..45289945
RNA-Seq ExpressionTan0020141
SyntenyTan0020141
Gene Ontology termsGO:0006412 - translation (biological process)
GO:1902600 - proton transmembrane transport (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008289 - lipid binding (molecular function)
GO:0015078 - proton transmembrane transporter activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR000218 - Ribosomal protein L14P
IPR016180 - Ribosomal protein L10e/L16
IPR020798 - Ribosomal protein L16, conserved site
IPR036853 - Ribosomal protein L14 superfamily
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD7117008.1 hypothetical protein E3N88_04276 [Mikania micrantha]4.4e-6982.32Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-------DNSGARELMRIRI
        +SYR N ICFG+Y +QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP +TRMGSGKGSPEYW  VVKP       DNSGARELM IRI
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-------DNSGARELMRIRI

Query:  IGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        IGASNRRYAHIGDVIVAVIK  VPN PLERSEV+RAVIV TCKELKR+N MIIRYDDN AVV D
Subjt:  IGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

KAF3449786.1 hypothetical protein FNV43_RR05864 [Rhamnella rubrinervis]3.6e-7187.34Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-DNSGARELMRIRIIGASNR
        M+YR NRICFGRY +QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPT+TRMGSGKGSPE+W  VVKP DNSGARELM IRIIGASNR
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-DNSGARELMRIRIIGASNR

Query:  RYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        RYA IGDVIVAVIK+ VPNTPLERSEVIRAVIV TCKELKR+N MIIRYDDN AVV D
Subjt:  RYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

TYK15676.1 50S ribosomal protein L14 [Cucumis melo var. makuwa]2.2e-7389.81Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR
        +SYR N ICFGRY IQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPT+TRMGSGKGSPEYW  VVKPDNSGARELM IRIIGASNRR
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR

Query:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        YAHIGDVIV VIKKVVPNTPLERSEVI AVI+ TCKELKREN MIIRYDDN AVV D
Subjt:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

XP_022728609.1 uncharacterized protein LOC111284164 [Durio zibethinus]1.9e-7287.9Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR
        +SYR NRICFGRY +QALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+R T+TRMGSGKGSPEYW  VVKPDNSGARELM IR+IGASNRR
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR

Query:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        YAHIGDVIVAVIKK VP  PLERSEVIRAVIV TCKELKR+N MIIRYDDN AVV D
Subjt:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

XP_034910603.1 50S ribosomal protein L14, chloroplastic [Populus alba]6.1e-7186.62Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR
        +S R NRICFGRY +QALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRP++TRMGSGKGSPEYW  VVKPDNSGARELM IRIIG SNRR
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR

Query:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        YAHIGDVI+AVIK+ VPN+PLERSEVIRAVIV T KELKR+N MIIRYDDN AVV D
Subjt:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

TrEMBL top hitse value%identityAlignment
A0A385G255 Ribosomal protein L142.1e-6983.54Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-DNSGARELMRIRIIGASNR
        +SYR N ICFGRY +QALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKP+T+RPT+TRMGSGKGSPEYW  VVKP DNSGARELM IRIIGASNR
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-DNSGARELMRIRIIGASNR

Query:  RYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        RYA+IGD++VAVIK+ VPNTPLERSEVIRAVIV TCKELKR N MII Y+DN AVV D
Subjt:  RYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

A0A5D3CZ11 50S ribosomal protein L141.1e-7389.81Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR
        +SYR N ICFGRY IQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPT+TRMGSGKGSPEYW  VVKPDNSGARELM IRIIGASNRR
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR

Query:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        YAHIGDVIV VIKKVVPNTPLERSEVI AVI+ TCKELKREN MIIRYDDN AVV D
Subjt:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

A0A5N6PBH8 Uncharacterized protein2.1e-6982.32Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-------DNSGARELMRIRI
        +SYR N ICFG+Y +QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP +TRMGSGKGSPEYW  VVKP       DNSGARELM IRI
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-------DNSGARELMRIRI

Query:  IGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        IGASNRRYAHIGDVIVAVIK  VPN PLERSEV+RAVIV TCKELKR+N MIIRYDDN AVV D
Subjt:  IGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

A0A5N6PW49 Ribosomal_L16 domain-containing protein2.1e-6982.32Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-------DNSGARELMRIRI
        +SYR N ICFG+Y +QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP +TRMGSGKGSPEYW  VVKP       DNSGARELM IRI
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP-------DNSGARELMRIRI

Query:  IGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        IGASNRRYAHIGDVIVAVIK  VPN PLERSEV+RAVIV TCKELKR+N MIIRYDDN AVV D
Subjt:  IGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

A0A6P5XJN5 30S ribosomal protein S3, chloroplastic9.2e-7387.9Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR
        +SYR NRICFGRY +QALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+R T+TRMGSGKGSPEYW  VVKPDNSGARELM IR+IGASNRR
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRR

Query:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        YAHIGDVIVAVIKK VP  PLERSEVIRAVIV TCKELKR+N MIIRYDDN AVV D
Subjt:  YAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

SwissProt top hitse value%identityAlignment
A0ZZ72 50S ribosomal protein L16, chloroplastic1.9e-3890Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP
        +SYR NRICFGRY +QALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPT+TRMGSGKGSPEYW  VVKP
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP

B1A972 50S ribosomal protein L16, chloroplastic3.2e-3888.75Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP
        +SYR NRICFGRY +QALEP WITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTLRPT+TRMGSGKGSPEYW  VVKP
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP

Q09ME0 50S ribosomal protein L16, chloroplastic3.2e-3890Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP
        +SYR N ICFGRY +QALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPT+TRMGSGKGSPEYW  VVKP
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP

Q0ZIY1 50S ribosomal protein L16, chloroplastic1.9e-3890Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP
        +SYR NRICFGRY +QALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPT+TRMGSGKGSPEYW  VVKP
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP

Q2L940 50S ribosomal protein L16, chloroplastic1.9e-3890Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP
        +SYR NRICFGRY +QALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPT+TRMGSGKGSPEYW  VVKP
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 123.5e-2469.86Show/hide
Query:  ICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP
        IC  RY +Q LEPAWITSRQIEAGRRAMTRN+ RG  + V IF DKPVT+RP +TRMG GKG+P +W  VVKP
Subjt:  ICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP

AT5G46160.1 Ribosomal protein L14p/L23e family protein3.9e-0733.77Show/hide
Query:  DNSGARELMRIRIIGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        DNSGA+++M I+ +    ++ A +GD IVA +K+ +PN  +++  V+  V+V    +  R +   +R+DDN  V+ D
Subjt:  DNSGARELMRIRIIGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

ATCG00780.1 ribosomal protein L141.5e-3087.01Show/hide
Query:  DNSGARELMRIRIIGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD
        DNSGARELM IRIIGASNRRYAHIGDVIVAVIK+ +PNTPLERSEVIRAVIV TCKELKR N  IIRYDDN AVV D
Subjt:  DNSGARELMRIRIIGASNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD

ATCG00790.1 ribosomal protein L161.6e-3786.25Show/hide
Query:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP
        +S R NRICFGRY +Q LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP +TRMGSGKGSPEYW  VVKP
Subjt:  MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKP

ATMG00080.1 ribosomal protein L161.4e-1244.74Show/hide
Query:  RICFGRYVIQALEPAWITSRQIEAGR--------RAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYW
        ++ FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F D P+T +PT+ RMG GKG+P  W
Subjt:  RICFGRYVIQALEPAWITSRQIEAGR--------RAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTATCGAAGCAATCGTATTTGCTTCGGTAGATACGTTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATTGAAGCGGGACGAAGGGCAATGACACG
AAATGTACGACGTGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACATTAAGACCCACACAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATT
GGGAAGTTGTTGTTAAACCAGATAACAGTGGAGCCCGAGAATTGATGCGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCT
GTAATCAAGAAAGTCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACATACTTGTAAAGAACTCAAACGAGAAAACGATATGATAATACG
ATATGATGACAATGTTGCGGTTGTTACTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTATCGAAGCAATCGTATTTGCTTCGGTAGATACGTTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATTGAAGCGGGACGAAGGGCAATGACACG
AAATGTACGACGTGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACATTAAGACCCACACAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATT
GGGAAGTTGTTGTTAAACCAGATAACAGTGGAGCCCGAGAATTGATGCGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCT
GTAATCAAGAAAGTCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACATACTTGTAAAGAACTCAAACGAGAAAACGATATGATAATACG
ATATGATGACAATGTTGCGGTTGTTACTGATTAA
Protein sequenceShow/hide protein sequence
MSYRSNRICFGRYVIQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTQTRMGSGKGSPEYWEVVVKPDNSGARELMRIRIIGASNRRYAHIGDVIVA
VIKKVVPNTPLERSEVIRAVIVHTCKELKRENDMIIRYDDNVAVVTD