| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa] | 6.8e-181 | 60.33 | Show/hide |
Query: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNV
Subjt: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
Query: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
A MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK G
Subjt: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
Query: RKGKAP-ATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
+ KA A K KTK A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+R
Subjt: RKGKAP-ATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
Query: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
VGTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
Query: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
LGHINLNRIERL KN LL++LE++SLP CESCLE DDY
Subjt: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
Query: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
SRYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFW
Subjt: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
Query: GYAMR
GYA++
Subjt: GYAMR
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| KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa] | 1.2e-180 | 59.77 | Show/hide |
Query: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNV
Subjt: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
Query: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
A MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK G
Subjt: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
Query: RKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRV
+ KA K A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+RV
Subjt: RKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRV
Query: GTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL------------------------
GTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: GTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL------------------------
Query: -----------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDYS
LGHINLNRIERL KN LL++LE++SLP CESCLE DDYS
Subjt: -----------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDYS
Query: RYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWG
RYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFWG
Subjt: RYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWG
Query: YAMR
YA++
Subjt: YAMR
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| KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa] | 1.2e-180 | 59.77 | Show/hide |
Query: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNV
Subjt: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
Query: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
A MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK G
Subjt: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
Query: RKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRV
+ KA K A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+RV
Subjt: RKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRV
Query: GTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL------------------------
GTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: GTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL------------------------
Query: -----------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDYS
LGHINLNRIERL KN LL++LE++SLP CESCLE DDYS
Subjt: -----------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDYS
Query: RYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWG
RYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFWG
Subjt: RYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWG
Query: YAMR
YA++
Subjt: YAMR
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| KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa] | 6.8e-181 | 59.67 | Show/hide |
Query: RECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFN
+ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFN
Subjt: RECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFN
Query: VAGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKI
VA MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK
Subjt: VAGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKI
Query: GRKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
G+ KA K A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+R
Subjt: GRKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
Query: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
VGTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
Query: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
LGHINLNRIERL KN LL++LE++SLP CESCLE DDY
Subjt: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
Query: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
SRYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFW
Subjt: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
Query: GYAMR
GYA++
Subjt: GYAMR
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| TYK14550.1 gag/pol protein [Cucumis melo var. makuwa] | 6.8e-181 | 60.33 | Show/hide |
Query: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNV
Subjt: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
Query: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
A MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK G
Subjt: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
Query: RKGKAP-ATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
+ KA A K KTK A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+R
Subjt: RKGKAP-ATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
Query: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
VGTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
Query: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
LGHINLNRIERL KN LL++LE++SLP CESCLE DDY
Subjt: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
Query: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
SRYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFW
Subjt: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
Query: GYAMR
GYA++
Subjt: GYAMR
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SMH8 Gag/pol protein | 5.6e-181 | 59.77 | Show/hide |
Query: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNV
Subjt: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
Query: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
A MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK G
Subjt: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
Query: RKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRV
+ KA K A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+RV
Subjt: RKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRV
Query: GTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL------------------------
GTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: GTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL------------------------
Query: -----------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDYS
LGHINLNRIERL KN LL++LE++SLP CESCLE DDYS
Subjt: -----------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDYS
Query: RYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWG
RYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFWG
Subjt: RYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWG
Query: YAMR
YA++
Subjt: YAMR
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| A0A5A7TWB9 Gag/pol protein | 5.6e-181 | 59.77 | Show/hide |
Query: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNV
Subjt: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
Query: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
A MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK G
Subjt: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
Query: RKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRV
+ KA K A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+RV
Subjt: RKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRV
Query: GTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL------------------------
GTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: GTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL------------------------
Query: -----------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDYS
LGHINLNRIERL KN LL++LE++SLP CESCLE DDYS
Subjt: -----------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDYS
Query: RYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWG
RYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFWG
Subjt: RYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWG
Query: YAMR
YA++
Subjt: YAMR
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| A0A5A7V4M1 Gag/pol protein | 3.3e-181 | 59.67 | Show/hide |
Query: RECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFN
+ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFN
Subjt: RECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFN
Query: VAGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKI
VA MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK
Subjt: VAGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKI
Query: GRKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
G+ KA K A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+R
Subjt: GRKGKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
Query: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
VGTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
Query: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
LGHINLNRIERL KN LL++LE++SLP CESCLE DDY
Subjt: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
Query: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
SRYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFW
Subjt: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
Query: GYAMR
GYA++
Subjt: GYAMR
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| A0A5D3CPJ6 Gag/pol protein | 3.3e-181 | 60.33 | Show/hide |
Query: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNV
Subjt: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
Query: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
A MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK G
Subjt: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
Query: RKGKAP-ATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
+ KA A K KTK A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+R
Subjt: RKGKAP-ATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
Query: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
VGTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
Query: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
LGHINLNRIERL KN LL++LE++SLP CESCLE DDY
Subjt: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
Query: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
SRYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFW
Subjt: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
Query: GYAMR
GYA++
Subjt: GYAMR
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| A0A5D3CSZ6 Gag/pol protein | 3.3e-181 | 60.33 | Show/hide |
Query: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
ECP++PA N + W K N+KA+ YILAS+SEVLAKKHE M++AREIM SLQEMFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNV
Subjt: ECPRIPARNVPLS-HWGVGHWIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNV
Query: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
A MN AVIDE SQVSFILESL +SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+SGTK SSSG KK +KKK G
Subjt: AGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIG
Query: RKGKAP-ATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
+ KA A K KTK A KG CF+CN +GHWKRNCPKYL E K+ K+GK DLL LETCLVENDD WI+DSGATNHVCSSFQ SS+++LE GEMT+R
Subjt: RKGKAP-ATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKYLVELKE-KKGKLDLLFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLR
Query: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
VGTG VVSA AVG +L FL L N+Y+VP LKRNLIS+ CL+E Y ++F++N+ FI K GV ICSAKL+N L
Subjt: VGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEGVNICSAKLKNGL-----------------------
Query: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
LGHINLNRIERL KN LL++LE++SLP CESCLE DDY
Subjt: ------------------LGHINLNRIERLSKNRLLNKLEDDSLPPCESCLE---------------------------------------------DDY
Query: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
SRYGY+YLM HKSEALEKFKEYKAEVENAL K+IKT RSDRGGEYMDL+FQ+Y++E I QLSAP TPQQNGVSERRNRTLLD+VRSMMSYA L SFW
Subjt: SRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFW
Query: GYAMR
GYA++
Subjt: GYAMR
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 1.8e-14 | 32.65 | Show/hide |
Query: DDYSRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSA
D ++ Y YL+ +KS+ F+++ A+ E + L D G EY+ + + ++ I + L+ P+TPQ NGVSER RT+ + R+M+S A+L
Subjt: DDYSRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSA
Query: SFWGYAMRDCDSNLERV---------------FHQK--YLKHLLNFG
SFWG A+ + R+ +H K YLKHL FG
Subjt: SFWGYAMRDCDSNLERV---------------FHQK--YLKHLLNFG
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 8.1e-28 | 23.99 | Show/hide |
Query: WIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAGMNRAV-IDEQSQVSFILE
W ++++A I +S+ + +AR I + L+ ++ + + K +Y M EG++ H L++ N V I+E+ + +L
Subjt: WIKVNDKAKIYILASVSEVLAKKHELMVSAREIMSSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAGMNRAV-IDEQSQVSFILE
Query: SLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLF-AHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIGRKGKAPATYKGKGKTKLA
SL S+ + + K L + + L M+ K + G+A + R +Q+ S++ GR G +GK+K
Subjt: SLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLF-AHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIGRKGKAPATYKGKGKTKLA
Query: DKGK---CFNCNMDGHWKRNCPKYLVELKEKKGKLD--------------LLFL---ETCL-VENDDLTWILDSGATNHVCSSFQETSSFKELEEGEM-T
K + C+NCN GH+KR+CP E G+ + +LF+ E C+ + + W++D+ A++H + F G+ T
Subjt: DKGK---CFNCNMDGHWKRNCPKYLVELKEKKGKLD--------------LLFL---ETCL-VENDDLTWILDSGATNHVCSSFQETSSFKELEEGEM-T
Query: LRVGTGDVVSARAVGD--AKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEG-----------------VNICSAKLK-----
+++G +GD K G L L ++ VP L+ NLIS L GY S+ N+ + L +G IC +L
Subjt: LRVGTGDVVSARAVGD--AKLFFGDRFLSLINLYIVPKLKRNLISISCLIELGYCISFSINEAFILKEG-----------------VNICSAKLK-----
Query: ------NGLLGHINLNRIERLSKNRLLNKLEDDSLPPCESCL---------------------------------------------EDDYSRYGYLYLM
+ +GH++ ++ L+K L++ + ++ PC+ CL DD SR ++Y++
Subjt: ------NGLLGHINLNRIERLSKNRLLNKLEDDSLPPCESCL---------------------------------------------EDDYSRYGYLYLM
Query: HHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWGYAMR
K + + F+++ A VE G+ +K LRSD GGEY F++Y H I+ + + P TPQ NGV+ER NRT+++ VRSM+ A+L SFWG A++
Subjt: HHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWGYAMR
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| Q07163 Transposon TyH3 Gag-Pol polyprotein | 2.2e-04 | 25.86 | Show/hide |
Query: DSLPPCESCLEDDYSRYGYLYLMHHKSE--ALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLD
+S P D+ +++ ++Y +H + E L+ F A ++N S+ ++ DRG EY + ++ ++ I + + +GV+ER NRTLLD
Subjt: DSLPPCESCLEDDYSRYGYLYLMHHKSE--ALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLD
Query: IVRSMMSYAQLSASFW
R+ + + L W
Subjt: IVRSMMSYAQLSASFW
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.5e-16 | 20.9 | Show/hide |
Query: ILASVSEVLAKKHELMVSAREIMSSLQEMFGQPS-GQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAGMNRAVIDEQSQVSFILESLSKSFLQFRS
+L ++S + +A +I +L++++ PS G + L+ K ++ +++ L+ F+ + +D QV +LE+L + +
Subjt: ILASVSEVLAKKHELMVSAREIMSSLQEMFGQPS-GQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAGMNRAVIDEQSQVSFILESLSKSFLQFRS
Query: NAVMNKIEYNLTTLLNELQTFQSLMKNKGQADG---EANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIGRKGKAPATYKGKGKTKLADKGKCFNCN
LT + L +S + A AN +H +++ N K + ++ + GKC C
Subjt: NAVMNKIEYNLTTLLNELQTFQSLMKNKGQADG---EANLFAHSRRFQKGSSSGTKPCNSSSGLKKTQKKKIGRKGKAPATYKGKGKTKLADKGKCFNCN
Query: MDGHWKRNCPK---YLVELKEKKGKLDL--------LFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRVGTGDVVSARAVGDAKLF
+ GH + C + +L + ++ L L + N+ W+LDSGAT+H+ S F S + G+ + V G + G L
Subjt: MDGHWKRNCPK---YLVELKEKKGKLDL--------LFLETCLVENDDLTWILDSGATNHVCSSFQETSSFKELEEGEMTLRVGTGDVVSARAVGDAKLF
Query: FGDRFLSLINLYIVPKLKRNLISISCLIELG------YCISFSINEAFILKEGVNICSAKLKNGL-----------------------------LGHINL
R L+L N+ VP + +NLIS+ L + SF + + L GV + K K+ L LGH
Subjt: FGDRFLSLINLYIVPKLKRNLISISCLIELG------YCISFSINEAFILKEGVNICSAKLKNGL-----------------------------LGHINL
Query: NRIERLSKNRLLNKLE-DDSLPPCESCL--------------------------------------------EDDYSRYGYLYLMHHKSEALEKFKEYKA
+ + + N L+ L C CL D ++RY +LY + KS+ E F +K
Subjt: NRIERLSKNRLLNKLE-DDSLPPCESCL--------------------------------------------EDDYSRYGYLYLMHHKSEALEKFKEYKA
Query: EVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWGYA
+EN I T SD GGE++ L +Y +H I S P+TP+ NG+SER++R +++ +++S+A + ++W YA
Subjt: EVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTLLDIVRSMMSYAQLSASFWGYA
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.3e-17 | 22.65 | Show/hide |
Query: LDLMVHFNVAGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADG---EANLFAH----SRRFQKGSSSGTKP
L + F+ + +D QV +LE+L + +LT + L +S + A+ AN+ H + R Q
Subjt: LDLMVHFNVAGMNRAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADG---EANLFAH----SRRFQKGSSSGTKP
Query: CNSSSGLKKTQKKKIGRK--GKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKY-----LVELKEKKGKLDLLFLETCLVENDDL---TWILDSGAT
N+++ Q G + + P Y G+C C++ GH + CP+ ++ L N W+LDSGAT
Subjt: CNSSSGLKKTQKKKIGRK--GKAPATYKGKGKTKLADKGKCFNCNMDGHWKRNCPKY-----LVELKEKKGKLDLLFLETCLVENDDL---TWILDSGAT
Query: NHVCSSFQETSSFKELEEGEMTLRVGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELG------YCISFSINEAFILKEGVNICS
+H+ S F SF + G + + G + G A L R L L + VP + +NLIS+ L + SF + + L GV +
Subjt: NHVCSSFQETSSFKELEEGEMTLRVGTGDVVSARAVGDAKLFFGDRFLSLINLYIVPKLKRNLISISCLIELG------YCISFSINEAFILKEGVNICS
Query: AKLKNGL-----------------------------LGHINLNRIERLSKNRLLNKLE-DDSLPPCESC-------------------------------
K K+ L LGH +L + + N L L L C C
Subjt: AKLKNGL-----------------------------LGHINLNRIERLSKNRLLNKLE-DDSLPPCESC-------------------------------
Query: -------------LEDDYSRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTL
D ++RY +LY + KS+ + F +K+ VEN I TL SD GGE++ LR DY+ +H I S P+TP+ NG+SER++R +
Subjt: -------------LEDDYSRYGYLYLMHHKSEALEKFKEYKAEVENALGKSIKTLRSDRGGEYMDLRFQDYMIEHEIKFQLSAPNTPQQNGVSERRNRTL
Query: LDIVRSMMSYAQLSASFWGYA
+++ +++S+A + ++W YA
Subjt: LDIVRSMMSYAQLSASFWGYA
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