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Tan0020164 (gene) of Snake gourd v1 genome

Gene IDTan0020164
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG01:105750745..105751525
RNA-Seq ExpressionTan0020164
SyntenyTan0020164
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON62306.1 hypothetical protein TorRG33x02_279590 [Trema orientale]1.1e-0938Show/hide
Query:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY
        AT  +  N I+  ++   + V  ++++  +V+ YF HLF A   D E TD +LS+I+ SIS D N  L+R FT  +++  LKSM P K+P  D     FY
Subjt:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY

PON88849.1 hypothetical protein TorRG33x02_153640 [Trema orientale]3.1e-0933Show/hide
Query:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY
        A+ CK++N I    ++   W  ++ E+  +V  YF+ +F++E  + E  D ++ +    ++++ N  LLRDFT E+I+  LK M+P K+P  DG    FY
Subjt:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY

XP_010686122.1 PREDICTED: uncharacterized protein LOC104900404 [Beta vulgaris subsp. vulgaris]2.6e-1138Show/hide
Query:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY
        A+Q K++N IKG  +   EW  + +E+ ++V KYFR +F++    T   D++L  +  S++ + N  LL+ +++EEI   LK M+P KAP  DG H  FY
Subjt:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY

XP_021729741.1 uncharacterized protein LOC110696696 [Chenopodium quinoa]1.7e-1036.46Show/hide
Query:  KRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY
        K+KN I    +    W  D +++ +I+ ++F  LF++   D  + D++L S+S  I  D+NR ++R FT+ E++  LK M+P+KAP  DG H  FY
Subjt:  KRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY

XP_031101935.1 uncharacterized protein LOC116005837 [Ipomoea triloba]1.4e-0941.18Show/hide
Query:  RLATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVG
        R A+ CK+KN +    N   EWV + + M  +V  YF+++F  +L  +   +   SSIS  +S  DN  LLR FT +EI   L SM P KAP  DG + G
Subjt:  RLATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVG

Query:  FY
        FY
Subjt:  FY

TrEMBL top hitse value%identityAlignment
A0A2P5CMT2 Uncharacterized protein5.2e-1038Show/hide
Query:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY
        AT  +  N I+  ++   + V  ++++  +V+ YF HLF A   D E TD +LS+I+ SIS D N  L+R FT  +++  LKSM P K+P  D     FY
Subjt:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY

A0A2P5ETH3 Uncharacterized protein1.5e-0933Show/hide
Query:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY
        A+ CK++N I    ++   W  ++ E+  +V  YF+ +F++E  + E  D ++ +    ++++ N  LLRDFT E+I+  LK M+P K+P  DG    FY
Subjt:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY

A0A803PE40 Uncharacterized protein2.0e-0941Show/hide
Query:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY
        AT  KR N IK  +NS     +  KEMT I+  YF+ LF+A   DT      + +I  + +   N  L + FT EEI   LK+MNP K+P SDG    FY
Subjt:  ATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY

A0A803PRV5 Uncharacterized protein1.5e-0935.29Show/hide
Query:  RLATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVG
        R A+  K KN IKG  +   +W+T+N+ M K+   YF+ LF++   + EV ++    I   +S   N +LL  FT+EE+   ++ ++P KAP S G    
Subjt:  RLATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVG

Query:  FY
        FY
Subjt:  FY

A0A803QP51 Uncharacterized protein3.4e-0938.71Show/hide
Query:  NLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY
        N IK   ++    VTD   ++ I++ YF+ LF+A+  D      +L +I  +I+ D N +LLRDFT+E++ F LKSM  +K+P  DG    FY
Subjt:  NLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHDTEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATTTTCAAGTAACGCATCTAAATTTCTTTTCGCCGATTATGTGACCTATCTTAGGGTGAACGTAGACGACTGTGCCATCACAAAATCGGGAATCAGAGTCGG
CTTTGATTCGAGCGTGATGGACCAAGCACCAATTGCCGCAGAGATCATCCATGACATCCGGATTAGAGCGACTACACCACGACTAGCTACTCAATGTAAAAGAAAGAATC
TGATCAAAGGGTTTTCAAATTCGCTCAAGGAATGGGTGACGGATAATAAGGAGATGACGAAAATTGTTGCTAAGTATTTCAGGCACCTCTTCTCGGCAGAATTACATGAT
ACTGAAGTAACTGACAAGATCCTGAGTAGCATAAGTGGTTCGATCTCGATCGATGATAATAGGTGGCTCTTAAGAGACTTTACTAGGGAGGAAATTGTGTTTGTCCTGAA
AAGCATGAATCCCCATAAGGCACCGTGGTCTGATGGGAGGCATGTGGGTTTTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATTTTCAAGTAACGCATCTAAATTTCTTTTCGCCGATTATGTGACCTATCTTAGGGTGAACGTAGACGACTGTGCCATCACAAAATCGGGAATCAGAGTCGG
CTTTGATTCGAGCGTGATGGACCAAGCACCAATTGCCGCAGAGATCATCCATGACATCCGGATTAGAGCGACTACACCACGACTAGCTACTCAATGTAAAAGAAAGAATC
TGATCAAAGGGTTTTCAAATTCGCTCAAGGAATGGGTGACGGATAATAAGGAGATGACGAAAATTGTTGCTAAGTATTTCAGGCACCTCTTCTCGGCAGAATTACATGAT
ACTGAAGTAACTGACAAGATCCTGAGTAGCATAAGTGGTTCGATCTCGATCGATGATAATAGGTGGCTCTTAAGAGACTTTACTAGGGAGGAAATTGTGTTTGTCCTGAA
AAGCATGAATCCCCATAAGGCACCGTGGTCTGATGGGAGGCATGTGGGTTTTTACTAA
Protein sequenceShow/hide protein sequence
MEEFSSNASKFLFADYVTYLRVNVDDCAITKSGIRVGFDSSVMDQAPIAAEIIHDIRIRATTPRLATQCKRKNLIKGFSNSLKEWVTDNKEMTKIVAKYFRHLFSAELHD
TEVTDKILSSISGSISIDDNRWLLRDFTREEIVFVLKSMNPHKAPWSDGRHVGFY