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Tan0020184 (gene) of Snake gourd v1 genome

Gene IDTan0020184
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionEF hand calcium-binding family protein
Genome locationLG11:12446663..12446917
RNA-Seq ExpressionTan0020184
SyntenyTan0020184
Gene Ontology termsGO:0012505 - endomembrane system (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140303.1 polcalcin Ole e 3 [Cucumis sativus]5.8e-3695.24Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQDQAERERIFKRFDANGDGKIS+ ELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS+EEFTDFARANRGLVKDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

XP_016902555.1 PREDICTED: polcalcin Ole e 3 [Cucumis melo]4.5e-3695.24Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQDQAERERIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS+EEFTDFARANRGLVKDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

XP_022141635.1 polcalcin Bet v 4 [Momordica charantia]4.9e-3592.86Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQD+ ER+RIFKRFDANGDGKISA ELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS+EEFTDFARANRGLVKDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

XP_028068996.1 polcalcin Bet v 4 [Camellia sinensis]7.1e-3491.46Show/hide
Query:  DDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        DDPQD+AERERIFKRFDANGDGKISA+ELG+ALK LGSVT DE+QRMMAEIDTDGDGFISF+EFTDFARANRGLVKDVGKIF
Subjt:  DDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

XP_038875780.1 polcalcin Ole e 3 [Benincasa hispida]2.0e-3696.43Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQDQAERERIFKRFDANGDGKISA+ELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS+EEFTDFARANRGLVKDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

TrEMBL top hitse value%identityAlignment
A0A0A0KQB8 Uncharacterized protein2.8e-3695.24Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQDQAERERIFKRFDANGDGKIS+ ELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS+EEFTDFARANRGLVKDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

A0A1S4E3J8 polcalcin Ole e 32.2e-3695.24Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQDQAERERIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS+EEFTDFARANRGLVKDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

A0A2I0KIR2 polcalcin Ole e 32.2e-3389.29Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQ+ AERERIFKRFDANGDGKIS+ ELG+ALKTLGSVTA+EVQRMMAEIDTDGDGFIS EEFTDFARANRGL+KDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

A0A5A7V407 Polcalcin Ole e 32.2e-3695.24Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQDQAERERIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS+EEFTDFARANRGLVKDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

A0A6J1CIN1 polcalcin Bet v 42.4e-3592.86Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQD+ ER+RIFKRFDANGDGKISA ELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS+EEFTDFARANRGLVKDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

SwissProt top hitse value%identityAlignment
O81092 Polcalcin Ole e 38.8e-3586.9Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADDPQ+ AE ERIFKRFDANGDGKIS++ELGE LKTLGSVT +E+QRMMAEIDTDGDGFISFEEFT FARANRGLVKDV KIF
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

O81701 Polcalcin Aln g 47.4e-3487.06Show/hide
Query:  MADD-PQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADD PQDQAE ERIFK FDANGDGKISA+ELG+ALKTLGSVT DEV+ MMAEIDTDGDGFISF+EFT+FARANRGLVKDV KIF
Subjt:  MADD-PQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

Q39419 Polcalcin Bet v 48.8e-3587.06Show/hide
Query:  MADD-PQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MADD PQD+AERERIFKRFDANGDGKISA ELGEALKTLGS+T DEV+ MMAEIDTDGDGFISF+EFTDF RANRGL+KDV KIF
Subjt:  MADD-PQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

Q84V36 Polcalcin Che a 37.4e-3486.59Show/hide
Query:  DDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        D PQD A+RERIFKRFD NGDGKIS++ELG+ALKTLGSVT DEV+RMMAEIDTDGDGFISF+EFTDFARANRGLVKDV KIF
Subjt:  DDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

Q8VWY6 Polcalcin Nic t 12.4e-3278.57Show/hide
Query:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        MA+DPQD A+RERIFKRFD NGDGKIS+ ELGE LK LGSVT++EVQ MMAE+DTDGDGFIS+EEF +FARANRGL+KDV K+F
Subjt:  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein4.1e-1143.66Show/hide
Query:  DPQDQAERERIFKRFDANGDGKISATELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISFEEFTDFARAN
        D  +  E +++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+ +EF+   R++
Subjt:  DPQDQAERERIFKRFDANGDGKISATELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISFEEFTDFARAN

AT1G24620.1 EF hand calcium-binding protein family2.4e-1151.67Show/hide
Query:  ERERIFKRFDANGDGKISATELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISFEEFTD
        E E +FK+FD NGDGKIS+ ELG  + +LG  V  +E+++ + EID  GDG+I+FEEF +
Subjt:  ERERIFKRFDANGDGKISATELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISFEEFTD

AT1G73630.1 EF hand calcium-binding protein family5.7e-1346.67Show/hide
Query:  PQDQAERERIFKRFDANGDGKISATELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVK
        P    E +++F +FDANGDGKIS +ELG   K++G S T +E+ R++ EID D DGFI+ EEF    R++   V+
Subjt:  PQDQAERERIFKRFDANGDGKISATELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVK

AT3G03430.1 Calcium-binding EF-hand family protein2.5e-2972.84Show/hide
Query:  DPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        D  ++AE +RIFK+FDANGDGKISA ELG+ALK LGSVT ++++RMMAEIDTDGDG+IS++EF DFA ANRGL+KDV KIF
Subjt:  DPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

AT5G17480.1 pollen calcium-binding protein 11.8e-3079.01Show/hide
Query:  DPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF
        D  ++AE +RIFK+FDANGDGKISA EL EALKTLGSVTAD+V+RMMAEIDTDGDG IS++EFTDFA ANRGL+KDV KIF
Subjt:  DPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGATCCTCAAGACCAAGCTGAACGTGAACGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAAGATCTCTGCAACCGAGCTCGGGGAAGCCTTGAAGAC
GCTCGGTTCTGTCACTGCCGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGTTTCATTTCGTTCGAAGAGTTCACAGATTTTGCCCGTGCCAACC
GTGGATTAGTCAAGGATGTTGGAAAGATATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGATCCTCAAGACCAAGCTGAACGTGAACGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAAGATCTCTGCAACCGAGCTCGGGGAAGCCTTGAAGAC
GCTCGGTTCTGTCACTGCCGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGTTTCATTTCGTTCGAAGAGTTCACAGATTTTGCCCGTGCCAACC
GTGGATTAGTCAAGGATGTTGGAAAGATATTCTAA
Protein sequenceShow/hide protein sequence
MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF