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Tan0020191 (gene) of Snake gourd v1 genome

Gene IDTan0020191
OrganismTrichosanthes anguina (Snake gourd v1)
Description30S ribosomal protein S8, chloroplastic
Genome locationContig00034:104447..104866
RNA-Seq ExpressionTan0020191
SyntenyTan0020191
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000630 - Ribosomal protein S8
IPR035987 - Ribosomal protein S8 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009525221.1 ribosomal protein S8 [Hodgsonia macrocarpa]4.9e-5889.71Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQ IGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

YP_009751857.1 ribosomal protein S8 [Indofevillea khasiana]6.4e-5888.97Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENI+KILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQ IGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

YP_009752278.1 ribosomal protein S8 [Trichosanthes baviensis]7.5e-5990.44Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

YP_009752616.1 ribosomal protein S8 [Trichosanthes homophylla]3.7e-5889.71Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++ KDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

YP_009752870.1 ribosomal protein S8 [Baijiania yunnanensis]8.3e-5888.97Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANI+TS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQ IGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

TrEMBL top hitse value%identityAlignment
A0A6H0EPH4 30S ribosomal protein S8, chloroplastic3.6e-5990.44Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

A0A6H0ET37 30S ribosomal protein S8, chloroplastic3.6e-5990.44Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

A0A6H0ETP6 30S ribosomal protein S8, chloroplastic3.6e-5990.44Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

A0A6H0EVD8 30S ribosomal protein S8, chloroplastic3.6e-5990.44Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

A0A6H0EVQ2 30S ribosomal protein S8, chloroplastic3.6e-5990.44Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

SwissProt top hitse value%identityAlignment
A0ZZ70 30S ribosomal protein S8, chloroplastic1.1e-5280.15Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIA+IITS  IRNADMNRKG ++I STNITENIV+ILLR GF+       + NK F VLTLRHRRNRKGP++TILNL+RISRPGLRIYSNYQ+IPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARL+ IGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

Q09ME2 30S ribosomal protein S8, chloroplastic3.2e-5278.99Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL---------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRI
        MGKDTIA+IITS  IRNADMNRKG VRI STNITEN+VKILLR GF+         K  K+F VLTLRHRRNRKGPY+ ILNLKRISRPGLRIY NY+RI
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL---------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRI

Query:  PRILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        PRIL GMGIVILSTSRGIMTDR ARL+ IGGEILCYIW
Subjt:  PRILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

Q0ZIY3 30S ribosomal protein S8, chloroplastic2.4e-5280.88Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MG+DTIA+IITS  IRN DM+RK  VRI STNITENIVKILLR GF+       ++NK F VLTLRHRRNRKG Y+TILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARL+ IGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

Q49KW3 30S ribosomal protein S8, chloroplastic6.9e-5583.09Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFLK-------TNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MG+DTIA+IITS  IRNADMNRKG ++I STNITENIVKILLR GF+K        NK F VLTLRHRRNRKGPY+TILNLKRISRPGLRIYSNYQRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFLK-------TNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARL+ IGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

Q4VZK0 30S ribosomal protein S8, chloroplastic3.2e-6088.24Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIANIITS  IRNADMNRKGMVRIP+TNITENIVKILLR GF+       ++NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGGMGIVILSTSRGIMTDREARLQ IGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW

Arabidopsis top hitse value%identityAlignment
ATCG00770.1 ribosomal protein S81.6e-5178.68Show/hide
Query:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR
        MGKDTIA+IITS  IRNADMNRKG VRI STNITE+IVKILLR GF+       + N+ F +LTLRHRRN+K  YKTILNLKRISRPGLRIYSN QRIPR
Subjt:  MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPR

Query:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
        ILGG+GIVILSTS+GIMTDREARL+ IGGEILCYIW
Subjt:  ILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACAT
TGTTAAAATACTTTTACGACGAGGTTTTTTGAAAACCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATT
TAAAACGGATCAGTCGACCAGGTCTCCGAATCTATTCTAACTATCAACGAATTCCTAGAATTTTAGGCGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATG
ACAGACCGAGAAGCTCGACTACAGGAAATCGGCGGAGAAATTTTGTGTTATATATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACAT
TGTTAAAATACTTTTACGACGAGGTTTTTTGAAAACCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATT
TAAAACGGATCAGTCGACCAGGTCTCCGAATCTATTCTAACTATCAACGAATTCCTAGAATTTTAGGCGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATG
ACAGACCGAGAAGCTCGACTACAGGAAATCGGCGGAGAAATTTTGTGTTATATATGGTAA
Protein sequenceShow/hide protein sequence
MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFLKTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIM
TDREARLQEIGGEILCYIW