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Tan0020226 (gene) of Snake gourd v1 genome

Gene IDTan0020226
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG04:35112445..35112762
RNA-Seq ExpressionTan0020226
SyntenyTan0020226
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
A0A5A7TU93 Gag/pol protein3.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
A0A5A7TWB9 Gag/pol protein3.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
A0A5A7V4M1 Gag/pol protein3.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
A0A5D3CPJ6 Gag/pol protein3.8e-3880Show/hide
Query:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN
        M++ REIM SLQE FGQ   QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y LTTLLN
Subjt:  MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTCAACTCGTGAGATTATGAGTTCATTGCAGGAAACGTTTGGACAACCGTTTGGACAGATTCGGCACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGGA
GGGGTCATCGGTGAGAGAACACGTTCTCGATCTGATGGTCCACTTCAACGTGGCTGAAATGAACGGAGCAGTCATTGACGAGCAAAGTCAGGTATCGTTCATCTTGGAAT
CTCTCCCAAAGAGTTTCCTGCAATTCCGCAGCAATGCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTCCTTAATGAACTACAAACTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCTCAACTCGTGAGATTATGAGTTCATTGCAGGAAACGTTTGGACAACCGTTTGGACAGATTCGGCACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGGA
GGGGTCATCGGTGAGAGAACACGTTCTCGATCTGATGGTCCACTTCAACGTGGCTGAAATGAACGGAGCAGTCATTGACGAGCAAAGTCAGGTATCGTTCATCTTGGAAT
CTCTCCCAAAGAGTTTCCTGCAATTCCGCAGCAATGCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTCCTTAATGAACTACAAACTTTCTAG
Protein sequenceShow/hide protein sequence
MVSTREIMSSLQETFGQPFGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTF