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Tan0020297 (gene) of Snake gourd v1 genome

Gene IDTan0020297
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG05:43199579..43212547
RNA-Seq ExpressionTan0020297
SyntenyTan0020297
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0746Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLSGKTGST-----------------GIVREVNNVYWLHAVYRAKLAGSLGG
        MTE LSPRLY TVCTQ                 VEIELPVPD LP     S    ST                 GIVRE ++V WLHAV+RAK AG  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLSGKTGST-----------------GIVREVNNVYWLHAVYRAKLAGSLGG

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]7.1e-0647.06Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIV-CLSGKTGSTGIVREVNNVYWLHAVYRAKLAGSLGGD
        MTE LS RLY  VCTQ                 VEIEL VPD LP         + S GIVR  ++V WLHA++RAK AG  GGD
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIV-CLSGKTGSTGIVREVNNVYWLHAVYRAKLAGSLGGD

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]1.9e-0649.41Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLP--YIVCLSGKTGSTGIVREVNNVYWLHAVYRAKLAGSLGG
        MTE LS  LY TVCTQ                 VEIELPVPD LP   +   +   GS GIVRE +NV WL AV+RAK  G  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLP--YIVCLSGKTGSTGIVREVNNVYWLHAVYRAKLAGSLGG

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]2.7e-0547.62Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLS-GKTGSTGIVREVNNVYWLHAVYRAKLAGSLGG
        MTE LS RLY TVCTQ                 VEIELPV D LP     S   + S GIVR  ++V WLH+V+RAK A   GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLS-GKTGSTGIVREVNNVYWLHAVYRAKLAGSLGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0746Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLSGKTGST-----------------GIVREVNNVYWLHAVYRAKLAGSLGG
        MTE LSPRLY TVCTQ                 VEIELPVPD LP     S    ST                 GIVRE ++V WLHAV+RAK AG  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLSGKTGST-----------------GIVREVNNVYWLHAVYRAKLAGSLGG

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase6.3e-0846Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLSGKTGST-----------------GIVREVNNVYWLHAVYRAKLAGSLGG
        MTE LSPRLY TVCTQ                 VEIELPVPD LP     S    ST                 GIVRE ++V WLHAV+RAK AG  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLSGKTGST-----------------GIVREVNNVYWLHAVYRAKLAGSLGG

A0A5D3BP54 Gag/pol protein3.4e-0647.06Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIV-CLSGKTGSTGIVREVNNVYWLHAVYRAKLAGSLGGD
        MTE LS RLY  VCTQ                 VEIEL VPD LP         + S GIVR  ++V WLHA++RAK AG  GGD
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIV-CLSGKTGSTGIVREVNNVYWLHAVYRAKLAGSLGGD

A0A5D3C4P7 Retrotrans_gag domain-containing protein9.1e-0749.41Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLP--YIVCLSGKTGSTGIVREVNNVYWLHAVYRAKLAGSLGG
        MTE LS  LY TVCTQ                 VEIELPVPD LP   +   +   GS GIVRE +NV WL AV+RAK  G  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLP--YIVCLSGKTGSTGIVREVNNVYWLHAVYRAKLAGSLGG

A0A5D3CU23 Retrotrans_gag domain-containing protein1.3e-0547.62Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLS-GKTGSTGIVREVNNVYWLHAVYRAKLAGSLGG
        MTE LS RLY TVCTQ                 VEIELPV D LP     S   + S GIVR  ++V WLH+V+RAK A   GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLS-GKTGSTGIVREVNNVYWLHAVYRAKLAGSLGG

A0A5D3DX39 Reverse transcriptase6.3e-0846Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLSGKTGST-----------------GIVREVNNVYWLHAVYRAKLAGSLGG
        MTE LSPRLY TVCTQ                 VEIELPVPD LP     S    ST                 GIVRE ++V WLHAV+RAK AG  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPDNLPYIVCLSGKTGST-----------------GIVREVNNVYWLHAVYRAKLAGSLGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATAACCTGCCATATATAGTATGCTTATCAGGTAAAAC
AGGGTCAACAGGTATCGTTAGAGAGGTGAACAATGTCTATTGGCTTCACGCCGTCTACCGGGCTAAGTTAGCAGGTAGTTTGGGAGGGGATACAAACGAGGTGATCCAAC
TCGTTCATGTGGTTGACATGCGAGTGGGGGCAACCTGTGCAATGAGATTTTACAAGACCGGACCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATAACCTGCCATATATAGTATGCTTATCAGGTAAAAC
AGGGTCAACAGGTATCGTTAGAGAGGTGAACAATGTCTATTGGCTTCACGCCGTCTACCGGGCTAAGTTAGCAGGTAGTTTGGGAGGGGATACAAACGAGGTGATCCAAC
TCGTTCATGTGGTTGACATGCGAGTGGGGGCAACCTGTGCAATGAGATTTTACAAGACCGGACCGTGA
Protein sequenceShow/hide protein sequence
MTETLSPRLYSTVCTQVEIELPVPDNLPYIVCLSGKTGSTGIVREVNNVYWLHAVYRAKLAGSLGGDTNEVIQLVHVVDMRVGATCAMRFYKTGP