CuGenDBv2

Gene ID	Tan0020304
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG10:37210990..37211397
RNA-Seq Expression	Tan0020304
Synteny	Tan0020304
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

5.1e-42

73.88

Show/hide

Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

5.1e-42

73.88

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Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

5.1e-42

73.88

Show/hide

Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

5.1e-42

73.88

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Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

5.1e-42

73.88

Show/hide

Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

2.5e-42

73.88

Show/hide

Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

A0A5A7TU93 Gag/pol protein

2.5e-42

73.88

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Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

A0A5A7TWB9 Gag/pol protein

2.5e-42

73.88

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Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

A0A5A7V4M1 Gag/pol protein

2.5e-42

73.88

Show/hide

Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

A0A5D3CPJ6 Gag/pol protein

2.5e-42

73.88

Show/hide

Query:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG
        MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KG
Subjt:  MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKG

Query:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK
Subjt:  QANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTGGACAACCGTCTGGACAGATTCGACAAAAATCCCTCAAATACGTTTATAACTCCCGTATAAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGT
CCACTTCAACGTGGCTGAGATGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCATTCATCCTGGAGTCTCTTCCGAAGAGTTTCCTGCAATTCCGCAACAATGCAG
TGATGAACAAGATAGAGTATAACCTGACTACTCTCCTTAATGAACTACAGACTTCCCAGTCTCTTATGAAGAATAAGGGACAGGCTAATGGAGAGGCAAATCTGTTTGCC
CATTCCAGAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCCTCTTCTGGGCTTAAGAAGACCTAA

mRNA sequence

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Protein sequence

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MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFA
HSRRFQKGSSSGTKSCSSSSGLKKT

Tan0020304 (gene) of Snake gourd v1 genome