; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0020320 (gene) of Snake gourd v1 genome

Gene IDTan0020320
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG10:26990218..26991184
RNA-Seq ExpressionTan0020320
SyntenyTan0020320
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]4.4e-2774.7Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS
        SNLNTILVVDDLRFVLTEECP  PA NA ++V+EAYDRW+KANDKA+VYILAS++DVLAKKH  + +A+ IM SL++MFGQPS
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS

KAA0048103.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-2776.83Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQP
        SNLNTILVVDDLRFVLTEECP  PA NA ++ +EAYDRWIKAN+KA+VYILAS+SDVLAKKH+ L +A+EIM SL+ MFGQP
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQP

XP_022156751.1 uncharacterized protein LOC111023591 [Momordica charantia]4.0e-2875.9Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS
        +NLNTILVVDDLRFVLTE+CP  P  NA ++ ++AYDRWIKANDKAK+YILA++S+VLAKKHK +V+AREIM SLQDMFGQPS
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS

XP_038881627.1 uncharacterized protein LOC120073091 [Benincasa hispida]7.5e-2773.49Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS
        SNLNTILV+DDLRFVLTEECP VPARN+ Q++K+AYDRW KAN KA+VYIL S+SDVL KKH+ +++A +IM SLQ+MFGQPS
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]5.7e-2772.29Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS
        SNLNTILVVDDLRFVLTEECP  P  NA ++V+EAYDRW+KAN+KA++YILAS+SDVLAKKH+ L +A+EI+ SL+++FGQPS
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS

TrEMBL top hitse value%identityAlignment
A0A5A7TWX1 Gag/pol protein2.1e-2776.83Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQP
        SNLNTILVVDDLRFVLTEECP  PA NA ++ +EAYDRWIKAN+KA+VYILAS+SDVLAKKH+ L +A+EIM SL+ MFGQP
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQP

A0A6J1CP29 uncharacterized protein LOC1110134174.7e-2773.49Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS
        +NLNTILVVDDLRFVLTEECP  PA NA ++V+EA+DRW+KANDKA+VYILAS++DVLAKKH+ L++A+EIM SL+ MFG+PS
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS

A0A6J1DVX8 uncharacterized protein LOC1110235911.9e-2875.9Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS
        +NLNTILVVDDLRFVLTE+CP  P  NA ++ ++AYDRWIKANDKAK+YILA++S+VLAKKHK +V+AREIM SLQDMFGQPS
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS

A0A6J1DXQ5 uncharacterized protein LOC1110244574.7e-2773.49Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS
        +NLNTILVVDDLRFVLTEECP  PA NA ++V+EA+DRW+KANDKA+VYILAS++DVLAKKH+ L++A+EIM SL+ MFG+PS
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS

E2GK51 Gag/pol protein (Fragment)2.1e-2774.7Show/hide
Query:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS
        SNLNTILVVDDLRFVLTEECP  PA NA ++V+EAYDRW+KANDKA+VYILAS++DVLAKKH  + +A+ IM SL++MFGQPS
Subjt:  SNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGGCGACGTGCCGTCAATAGGGCGTCCCCCTAAGAATTCCAACTTGAATACGATTCTTGTTGTTGACGACCTACGGTTTGTACTGACTGAGGAATGTCCTCATGT
CCCTGCTCGAAACGCTCCTCAATCTGTTAAGGAGGCGTACGATCGCTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTGATGTTCTAGCCA
AAAAGCACAAGGGCTTGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGGATATGTTTGGACAACCGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGGCGACGTGCCGTCAATAGGGCGTCCCCCTAAGAATTCCAACTTGAATACGATTCTTGTTGTTGACGACCTACGGTTTGTACTGACTGAGGAATGTCCTCATGT
CCCTGCTCGAAACGCTCCTCAATCTGTTAAGGAGGCGTACGATCGCTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTGATGTTCTAGCCA
AAAAGCACAAGGGCTTGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGGATATGTTTGGACAACCGTCTTGA
Protein sequenceShow/hide protein sequence
MLGDVPSIGRPPKNSNLNTILVVDDLRFVLTEECPHVPARNAPQSVKEAYDRWIKANDKAKVYILASVSDVLAKKHKGLVSAREIMSSLQDMFGQPS