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Tan0020325 (gene) of Snake gourd v1 genome

Gene IDTan0020325
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSplicing factor subunit
Genome locationLG03:79181603..79183630
RNA-Seq ExpressionTan0020325
SyntenyTan0020325
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0016311 - dephosphorylation (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0004674 - protein serine/threonine kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016791 - phosphatase activity (molecular function)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5545115.1 hypothetical protein DKX38_013227 [Salix brachista]9.3e-3592.5Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFL
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFA+AENESIGRERYNFMQV  SF FL
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFL

KAE8688667.1 Splicing factor 3B subunit 5 [Hibiscus syriacus]7.9e-3492.11Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKS
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFA+AENESIGRERYNFMQ +K+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKS

PPS07641.1 hypothetical protein GOBAR_AA13014 [Gossypium barbadense]4.6e-3486.9Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFLFLFF
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFA+AENESIGRERYNFMQ    FL +F +F
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFLFLFF

RWR96626.1 Splicing factor 3B subunit 5/RDS3 complex subunit 10 [Cinnamomum micranthum f. kanehirae]4.6e-34100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV

XP_021911310.1 uncharacterized protein At4g14342-like [Carica papaya]2.1e-3497.3Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFAIAENESIGRERYNFMQVD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVD

TrEMBL top hitse value%identityAlignment
A0A2P5XWA9 Splicing factor subunit2.2e-3486.9Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFLFLFF
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFA+AENESIGRERYNFMQ    FL +F +F
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFLFLFF

A0A3S3R9V2 Splicing factor subunit2.2e-34100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQV

A0A5N5LQM0 Splicing factor subunit4.5e-3592.5Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFL
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFA+AENESIGRERYNFMQV  SF FL
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFL

A0A6A2ZAD1 Splicing factor subunit3.8e-3492.11Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKS
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFA+AENESIGRERYNFMQ +K+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKS

A0A803R3K1 Uncharacterized protein7.0e-3694.12Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFLFLFFL
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGRERYNFMQV   FLFLFL FL
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFLFLFFL

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143424.4e-3594.44Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q56K13 Splicing factor 3B subunit 52.7e-2163.77Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R R+N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q9BWJ5 Splicing factor 3B subunit 52.7e-2163.77Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R R+N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q9LW64 Uncharacterized protein At3g233251.3e-3493.06Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Q9VHI4 Splicing factor 3B subunit 59.4e-2267.65Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  R R+N M+
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 109.0e-3693.06Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 103.1e-3694.44Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATACGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAGTGGGCCGTAAACAT
TCAGCGAGATAGCTATGCATCTTATGTTGGACATTATCCAATTCTAGCATACTTCGCTATTGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGGTTG
ATAAGTCTTTTCTTTTTTTATTTTTATTTTTTCTAGTGAATTTCCTCTTCTCGCATTCTTAG
mRNA sequenceShow/hide mRNA sequence
TTTCCTTTCCCCTTCCTTTATTTTTAATGAAAACCTAAATTGCATCCGTTCCGTCCGTTGGCGAGTGAAATTGATATTTGTAGTGGTGCAGGACCTTCCGCTTGATTACT
TTCTCTGCTTCGTCGCGAGTGAACATGCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATACGTGGGAACTGGGCATGCCGACTTAAA
TAGATTTGAGTGGGCCGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTATCCAATTCTAGCATACTTCGCTATTGCAGAAAATGAATCTATTGGGAGGG
AACGCTACAACTTCATGCAGGTTGATAAGTCTTTTCTTTTTTTATTTTTATTTTTTCTAGTGAATTTCCTCTTCTCGCATTCTTAGTATTTTCTTTCATAATCTTTTCCT
CGGTTTAAATAATTATTCCAAATGTGTCTTTGCTTCACCTAGTATATTATCCCCCTGCTTTTTTGTTTTAGTTAATCCTTTCTAGTGGTTTCTGCTTATTTTCTTTCTTA
CCTCTGATCTGAATGTAATGATTATTACAGCATCCTGCACTACTTTAACTTGCCTTCCTCCCATGAACATGAGTTTCAAGTCCTATTATAGGATATTCCGGTAATGGTTC
CTTTTATACTTTTCTATTATTGGTTTTAAATCCCATCTATATGTATTTTTATCTTCACCCAACGGTGACTCAAGTAAATTTATTCTGCACGCTGTAATACAAATTGGTTA
TACCCAATCATGTAACTAGTGATTCTATTCGTAATGAGGGATGGAAAATTTTCATCATATTTCCTTCTAGATATCATTTTGGATATAATTAGATACTGAATGGAATGGGT
TGTTTTTCTTTTCCTTTTTGCAGAAAATGCTATTACCCTGCGGGCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTTATTATGACTTAATTTAAGCTGTAGTTAAAGAT
GGGAAGCGAGATAGATCATCGAAGGGCTGATGAATTTCTCCTTTCTGAACCAACTCTATGTTTGGTAAAGAGATGGTCGGAAGAACAAGTTATTTTCTCATTTTAGTATT
CTGGTCATGTAAGAATTAGTTTCTGCTTTCCAGGATACATGAAAGTTGTGAACTTGTGTACAAACTATACTATTTCCTCGTACTTCTTGTAGGAAAAACAAGGTTCATCT
CATTCATAGTTCAAATCCTTAGAAGTATAATTGTGTAAGCCAGTGTATTTGCATGGCCTAAAATAATGAAGAGAAGAAAGAATTCATTAGGTAA
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQVDKSFLFLFLFFLVNFLFSHS