; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0020376 (gene) of Snake gourd v1 genome

Gene IDTan0020376
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG01:4327002..4331792
RNA-Seq ExpressionTan0020376
SyntenyTan0020376
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF0892003.1 hypothetical protein E2562_012483 [Oryza meyeriana var. granulata]1.3e-1134Show/hide
Query:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLRHPISNE
        G  +  F + D  D D      LR+++RID+ +PL  G+ V +G   E+ WC + YE LPDFCY C  IGHTE  C+ ++    E  QYG  LR      
Subjt:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLRHPISNE

Query:  TSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEGELNQSPISTPS
         +      K+ D +G   +  G     G    +G  S G L +S    PS
Subjt:  TSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEGELNQSPISTPS

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.8e-1132.76Show/hide
Query:  MAQIYGNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEI----DADTEGNQYGP
        MA   GN +  F   D  +  F  G +LRIR+ ID+T+PLRRG+K+ I   +   W  + YE+LPDFCY C  IGH+  DC        D     ++YGP
Subjt:  MAQIYGNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEI----DADTEGNQYGP

Query:  NLRHPISNETSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEGELNQSPISTPSVQASGGGTSAAEKKG
         LR             SK    +GR+  +  R    G   M   +   E  +  +S  + Q      +AAE+ G
Subjt:  NLRHPISNETSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEGELNQSPISTPSVQASGGGTSAAEKKG

XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]1.3e-1141.49Show/hide
Query:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLR
        G  + TF   D  + D   G  LRI++R+D+ +PL RG+ V +G   + +WC V YE LPDFCY C  IGHT+  C  E++   E  Q+   LR
Subjt:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLR

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]6.7e-1335.71Show/hide
Query:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLRH-PISN
        G  L  F + D  + +F  G  LR+++RI++ +PLRRG+ + +G   +E WC +TYE LPDFCY C RIGHT+  C  ++ A  E   +G  LR+ P   
Subjt:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLRH-PISN

Query:  ETSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEG
        +     +RS+        R   GRS   G     G    G
Subjt:  ETSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEG

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]1.1e-1235.71Show/hide
Query:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLRH-PISN
        G  L  F + D  +  F  G  LR+++RI++ +PLRRG+ + +G   +E WC +TYE LPDFCY C RIGHT+  C  ++ A+ E   +G  LR+ P   
Subjt:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLRH-PISN

Query:  ETSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEG
        +     +RS+        R   GRS   G     G    G
Subjt:  ETSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEG

TrEMBL top hitse value%identityAlignment
A0A2P5EM24 Zinc knuckle CX2CX4HX4C2.3e-1146.97Show/hide
Query:  GNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTE
        G+ +R+R+R+D+T+PLRRG++V++G   +EI  ++ YE+LPDFC+ C  I H  L+CSF+ D  T+
Subjt:  GNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTE

A0A6G1BXB4 zf-CCHC_4 domain-containing protein6.1e-1234Show/hide
Query:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLRHPISNE
        G  +  F + D  D D      LR+++RID+ +PL  G+ V +G   E+ WC + YE LPDFCY C  IGHTE  C+ ++    E  QYG  LR      
Subjt:  GNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLRHPISNE

Query:  TSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEGELNQSPISTPS
         +      K+ D +G   +  G     G    +G  S G L +S    PS
Subjt:  TSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEGELNQSPISTPS

A0A6J1BSZ1 uncharacterized protein LOC1110054813.0e-1140Show/hide
Query:  MAQIYGNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCS-FEIDADTEGNQYGPNLR
        MA   GN +  F+  +S   +F  G+ LR+R+R DV +PL RG+K+ +   +   W  + YE+LPDF Y C R+ H   DCS   +D+ ++  QYGP LR
Subjt:  MAQIYGNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCS-FEIDADTEGNQYGPNLR

A0A6J1DU55 uncharacterized protein LOC1110231351.4e-1132.76Show/hide
Query:  MAQIYGNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEI----DADTEGNQYGP
        MA   GN +  F   D  +  F  G +LRIR+ ID+T+PLRRG+K+ I   +   W  + YE+LPDFCY C  IGH+  DC        D     ++YGP
Subjt:  MAQIYGNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEI----DADTEGNQYGP

Query:  NLRHPISNETSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEGELNQSPISTPSVQASGGGTSAAEKKG
         LR             SK    +GR+  +  R    G   M   +   E  +  +S  + Q      +AAE+ G
Subjt:  NLRHPISNETSLSGYRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEGELNQSPISTPSVQASGGGTSAAEKKG

A0A803P119 Uncharacterized protein1.1e-1343Show/hide
Query:  MAQIYGNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQ----YGP
        MA I G+ +  F K D    +   G  +RIRI +DVT+PL RG  +KI  +V+++W ++ YEKLPD CY+C R+GHT L C   ++A+  G      YGP
Subjt:  MAQIYGNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQ----YGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCAAATCTATGGCAATCGTTTAAGGACCTTCCAAAAAGCGGATTCCTTTGATCCAGACTTCCACGGGGGAAACACCCTTCGCATCAGAATTCGAATAGATGTTAC
AGAACCATTACGGAGAGGGATGAAGGTGAAGATCGGGGTCATGGTTGAAGAGATCTGGTGCCTAGTGACTTATGAGAAGCTCCCGGATTTTTGTTACCGATGCAGAAGAA
TTGGACACACAGAACTTGATTGTTCCTTTGAGATCGATGCAGACACAGAAGGAAATCAATATGGCCCAAACCTTCGACATCCCATATCGAACGAAACCTCGCTTTCGGGC
TATCGATCGAAGAACATGGATCTCAGAGGACGGGAGAGATTTAATCGAGGGCGCAGTGCGGTCTTAGGCCAACAGAAAATGGAGGGGGGAGATTCAGAGGGAGAACTGAA
TCAAAGTCCCATCTCGACCCCTTCGGTTCAGGCGAGTGGAGGTGGAACGTCGGCGGCTGAAAAGAAAGGACAAGACGCGACCGACGACAAGGACTCAGGGAAATTTTCTG
ATGATTTTCAAATAATTTTAAATGCAATTAATTTTTCAGCTACAACGGCTCCAAAGGACAAAACGCCGGCAAGAATCAAGGAGCATTCAGAGGCCCCCAAAAAAATTAAA
AACACAACAATTATACAGGTTTCAAAATCGCTGGGATTTGATGGGGTTGTTTCAGAAAATAAAGGAGAAAAATCAGGGGAGTCGGCTAATGTGAAGACGAAGAGCATGGA
CCCCACAGAACTAAACCTTGAAGATAATGTGTTGATCCACGGACAACAACCGGACACCCATTTTGGGCTTTCAGAATTGATGGGCCTAACTTTTACCATGGGTTGTGAGA
CAAATGTGAAGAAGCAGGCTCCTAGCTCTGGATCCAAAAATGGGTTGGGCCTCCAAAAGAAGAAAACCCCAATTGATGGAGAGATTCCTCGAACTAGATCTTGTATGAAT
GATGAAATAGTGTGGAAACATAACAACCGGGGAATCTTTACAGTCAAAAGTGCGTACCGACTAGGCCTTAATCACCGATGTCATCAAGATGCCTCAATCTCTGATAATGA
GAAAACGAGCCCGTGCATTGGCGGGAAATCAAAGTATCCTTCAACAATGGAGCCCTCCAATCCAGGGCTGGTAGAGCCTTTGTACGGATGCCTCTTGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCAAATCTATGGCAATCGTTTAAGGACCTTCCAAAAAGCGGATTCCTTTGATCCAGACTTCCACGGGGGAAACACCCTTCGCATCAGAATTCGAATAGATGTTAC
AGAACCATTACGGAGAGGGATGAAGGTGAAGATCGGGGTCATGGTTGAAGAGATCTGGTGCCTAGTGACTTATGAGAAGCTCCCGGATTTTTGTTACCGATGCAGAAGAA
TTGGACACACAGAACTTGATTGTTCCTTTGAGATCGATGCAGACACAGAAGGAAATCAATATGGCCCAAACCTTCGACATCCCATATCGAACGAAACCTCGCTTTCGGGC
TATCGATCGAAGAACATGGATCTCAGAGGACGGGAGAGATTTAATCGAGGGCGCAGTGCGGTCTTAGGCCAACAGAAAATGGAGGGGGGAGATTCAGAGGGAGAACTGAA
TCAAAGTCCCATCTCGACCCCTTCGGTTCAGGCGAGTGGAGGTGGAACGTCGGCGGCTGAAAAGAAAGGACAAGACGCGACCGACGACAAGGACTCAGGGAAATTTTCTG
ATGATTTTCAAATAATTTTAAATGCAATTAATTTTTCAGCTACAACGGCTCCAAAGGACAAAACGCCGGCAAGAATCAAGGAGCATTCAGAGGCCCCCAAAAAAATTAAA
AACACAACAATTATACAGGTTTCAAAATCGCTGGGATTTGATGGGGTTGTTTCAGAAAATAAAGGAGAAAAATCAGGGGAGTCGGCTAATGTGAAGACGAAGAGCATGGA
CCCCACAGAACTAAACCTTGAAGATAATGTGTTGATCCACGGACAACAACCGGACACCCATTTTGGGCTTTCAGAATTGATGGGCCTAACTTTTACCATGGGTTGTGAGA
CAAATGTGAAGAAGCAGGCTCCTAGCTCTGGATCCAAAAATGGGTTGGGCCTCCAAAAGAAGAAAACCCCAATTGATGGAGAGATTCCTCGAACTAGATCTTGTATGAAT
GATGAAATAGTGTGGAAACATAACAACCGGGGAATCTTTACAGTCAAAAGTGCGTACCGACTAGGCCTTAATCACCGATGTCATCAAGATGCCTCAATCTCTGATAATGA
GAAAACGAGCCCGTGCATTGGCGGGAAATCAAAGTATCCTTCAACAATGGAGCCCTCCAATCCAGGGCTGGTAGAGCCTTTGTACGGATGCCTCTTGGAGTGA
Protein sequenceShow/hide protein sequence
MAQIYGNRLRTFQKADSFDPDFHGGNTLRIRIRIDVTEPLRRGMKVKIGVMVEEIWCLVTYEKLPDFCYRCRRIGHTELDCSFEIDADTEGNQYGPNLRHPISNETSLSG
YRSKNMDLRGRERFNRGRSAVLGQQKMEGGDSEGELNQSPISTPSVQASGGGTSAAEKKGQDATDDKDSGKFSDDFQIILNAINFSATTAPKDKTPARIKEHSEAPKKIK
NTTIIQVSKSLGFDGVVSENKGEKSGESANVKTKSMDPTELNLEDNVLIHGQQPDTHFGLSELMGLTFTMGCETNVKKQAPSSGSKNGLGLQKKKTPIDGEIPRTRSCMN
DEIVWKHNNRGIFTVKSAYRLGLNHRCHQDASISDNEKTSPCIGGKSKYPSTMEPSNPGLVEPLYGCLLE