; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0020378 (gene) of Snake gourd v1 genome

Gene IDTan0020378
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein SKIP34
Genome locationLG03:73587473..73588554
RNA-Seq ExpressionTan0020378
SyntenyTan0020378
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440533.1 PREDICTED: protein SKIP34 [Cucumis melo]5.5e-3892.71Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH RPLFRGS  PYQTSVPENG ASVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPVSRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

XP_011657944.1 protein SKIP34 [Cucumis sativus]2.5e-3892.71Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH RPLFRGSL PYQTSVPENG  SVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPVSRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

XP_022950522.1 protein SKIP34 [Cucurbita moschata]1.8e-3690.72Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPEN-GDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH R LFRGS+SP QTSVPEN GDASVVDNLRGRLAETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+Y DRQEYVVRLL+PVSRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPEN-GDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

XP_022978829.1 protein SKIP34 [Cucurbita maxima]1.6e-3789.58Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH R LFRGS+SP QTSVPENGDASVVDNLRGRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEYVVRLL+P+SRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]1.2e-3790.62Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH R LFRG++SP QTSVPENGDASVVDNLRGRLAETESRLAQVRAREA LSRLLEEMKRLV VMEILENYLKR+YRDRQEYVVRLL+PVSRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIR5 Uncharacterized protein1.2e-3892.71Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH RPLFRGSL PYQTSVPENG  SVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPVSRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

A0A1S3B1B8 protein SKIP342.6e-3892.71Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH RPLFRGS  PYQTSVPENG ASVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPVSRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

A0A5D3CN14 Protein SKIP342.6e-3892.71Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH RPLFRGS  PYQTSVPENG ASVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPVSRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

A0A6J1GF20 protein SKIP348.5e-3790.72Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPEN-GDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH R LFRGS+SP QTSVPEN GDASVVDNLRGRLAETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+Y DRQEYVVRLL+PVSRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPEN-GDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

A0A6J1IV54 protein SKIP347.7e-3889.58Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MCNGH R LFRGS+SP QTSVPENGDASVVDNLRGRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEYVVRLL+P+SRK
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

SwissProt top hitse value%identityAlignment
Q8GWU7 Protein SKIP348.5e-1854.17Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MC GH + L   S S  +    +  D SVVD+LR RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R+++++++ + RL SPVS K
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK

Arabidopsis top hitse value%identityAlignment
AT5G65495.1 unknown protein6.0e-1954.17Show/hide
Query:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK
        MC GH + L   S S  +    +  D SVVD+LR RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R+++++++ + RL SPVS K
Subjt:  MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAACGGTCACCAACGCCCTTTGTTCAGAGGTAGTCTCTCTCCATACCAAACCTCCGTACCTGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATT
GGCGGAAACCGAGTCCCGACTTGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGATTAGTCTCTGTGATGGAGATCCTCGAGAACT
ACCTGAAACGGCAGTATCGCGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTCTCTCGAAAATAG
mRNA sequenceShow/hide mRNA sequence
CAACAACAACAACAACTCAATTTTACCACCAAATCAAAATACCATTCTGAACGCCAATAACGACGTCGTTTCAAAAGAGAGCTTCTCACCAATAATCAAGACCCGTTTGA
CCGCAAGATTCGAGAAGTCAAAAGTCATCATATCACCGCAGCGATTTTTAGCAGCCCCAAGAACCCGATTTCTTTATCCAAAAACCGATCTATCGCTGCAAAATTTGTTC
TCTCTGCGAACTTTCCGGCTATCGTCGATTTTTCAGTCTTCGCCATGTGTAACGGTCACCAACGCCCTTTGTTCAGAGGTAGTCTCTCTCCATACCAAACCTCCGTACCT
GAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTGGCGGAAACCGAGTCCCGACTTGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGCCTCTTGGA
GGAAATGAAACGATTAGTCTCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTATCGCGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTCTCTCGAA
AATAGAAATTCCTCCTCGCCAGCGGTGTCTGTAATTTTAGCAGTACCAACCAAAACTCGTTCTGTTTTCTTGCATTTTCGCTCCTTGTTGATTGTATTCGCCACCAAATC
TATGAATATATCCGATTTAAGAATTTGTAGTCGGTGGCTTTTGTTACTTTCCGCCCTTGATTTCACTTGGGAATGGAATCGTGAAATAGATACCATTATCTAGTTCAATT
GAAGGAGATTTTAAGTTTGTTGAATGAGAGCGAATCCACAAGAATATTTGATGGAATTTGTGGCCGTTTTTGTAATCTAATTAGGCATATTGTAATTACTTCTCAGATTA
AGATTGGTTTCAAAAGATTTTCAGATGTAACCTTGTGGCAAGTGTTCCTTTTCAACTACCGAAACGCGATTTCACATGGGAATGGAATTGTGGAATCCATACCATCAACT
CGTCCAGTCGAAGGAGATTTTGAGTTTGCTGAATGAGATGAGAGCGAATCCATGAGAAATGTTTTCTGCAATCTAATTAGGCATATTGTAAT
Protein sequenceShow/hide protein sequence
MCNGHQRPLFRGSLSPYQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVSRK