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Tan0020477 (gene) of Snake gourd v1 genome

Gene IDTan0020477
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSm domain-containing protein
Genome locationLG04:42966133..42978399
RNA-Seq ExpressionTan0020477
SyntenyTan0020477
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0000932 - P-body (cellular component)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005732 - small nucleolar ribonucleoprotein complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599859.1 Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia]7.6e-4297.78Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

KAG6600796.1 Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbita argyrosperma subsp. sororia]5.8e-4297.78Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

XP_004140401.1 sm-like protein LSM36B [Cucumis sativus]2.0e-4298.89Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

XP_022942809.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata]5.8e-4297.78Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

XP_023539899.1 uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]7.6e-4297.78Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

TrEMBL top hitse value%identityAlignment
A0A0A0KSS9 Sm domain-containing protein9.7e-4398.89Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

A0A1S3CBJ6 sm-like protein LSM36B9.7e-4398.89Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

A0A6J1DNH0 sm-like protein LSM36B9.7e-4398.89Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

A0A6J1FPX7 U6 snRNA-associated Sm-like protein LSm62.8e-4297.78Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

A0A6J1JLP5 uncharacterized protein LOC1114855523.7e-4297.78Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT+AEG
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

SwissProt top hitse value%identityAlignment
A8NHT8 U6 snRNA-associated Sm-like protein LSm63.0e-2573.97Show/hide
Query:  TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK
        T +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N+YGDAFIRGNNVLYIS  +
Subjt:  TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK

O22823 Sm-like protein LSM36B2.4e-3884.44Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K T+++G
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

P62312 U6 snRNA-associated Sm-like protein LSm63.9e-3387.01Show/hide
Query:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR
        S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR
Subjt:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR

P62313 U6 snRNA-associated Sm-like protein LSm63.9e-3387.01Show/hide
Query:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR
        S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR
Subjt:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR

Q9M1Z3 Sm-like protein LSM6A1.2e-3789.41Show/hide
Query:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST   TVA+G
Subjt:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

Arabidopsis top hitse value%identityAlignment
AT2G43810.1 Small nuclear ribonucleoprotein family protein1.7e-3984.44Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K T+++G
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

AT2G43810.2 Small nuclear ribonucleoprotein family protein1.7e-3984.44Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K T+++G
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

AT3G59810.1 Small nuclear ribonucleoprotein family protein8.4e-3989.41Show/hide
Query:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG
        EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST   TVA+G
Subjt:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG

AT4G30220.1 small nuclear ribonucleoprotein F1.4e-1448.48Show/hide
Query:  PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI
        P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Subjt:  PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI

AT4G30220.2 small nuclear ribonucleoprotein F1.4e-1448.48Show/hide
Query:  PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI
        P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Subjt:  PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATCGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAATCAATTCGGGGTCGTCCTGTAGTCGTGAAACTCAATTCTGGTGTTGACTA
TCGAGGTATTCTAGCTTGTCTCGATGGATACATGAATATAGCAATGGAGCAGACTGAAGAATACGTAAATGGACAGTTGAAAAACAAATATGGCGATGCTTTCATCCGTG
GAAATAACGTTCTCTACATCAGTACTTCGAAGAGGACGGTAGCAGAAGGGTGA
mRNA sequenceShow/hide mRNA sequence
TTTTCTCGTATCCATTTCTTTCGATAGAAGAATATCGGAGATGAGTATCGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAATCAATTCGGG
GTCGTCCTGTAGTCGTGAAACTCAATTCTGGTGTTGACTATCGAGGTATTCTAGCTTGTCTCGATGGATACATGAATATAGCAATGGAGCAGACTGAAGAATACGTAAAT
GGACAGTTGAAAAACAAATATGGCGATGCTTTCATCCGTGGAAATAACGTTCTCTACATCAGTACTTCGAAGAGGACGGTAGCAGAAGGGTGATCTTTGTTTTTAGCTAA
GAGTCTTCTCAGGAAATGCACATCCTTTGTAGCTATGTTCCTTCACTCTTATGCAGTAAAATGAGAGATCAACCGGAATTGGAAATTTGATCATTCATATTTGTATTATA
CAATGAAGTAGAATCCACCCATGGCGCCATGATGTGCTGTTCTTAGTGTTGCCCTTCTGCTTGTTAACCCTTGAATCATAAAGCTTGTTGTTTTGTTGGAAATGGAGTGC
CATTATGAATGAAACCTTTGTTTTTTGTTTTTTTTTTTCCTTTTTTGGAAATTACTGAC
Protein sequenceShow/hide protein sequence
MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTVAEG