; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0020484 (gene) of Snake gourd v1 genome

Gene IDTan0020484
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG10:12677910..12678341
RNA-Seq ExpressionTan0020484
SyntenyTan0020484
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]7.7e-1236.59Show/hide
Query:  MKGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNR
        M   +G +IRN  G  +  + K F     V+ +EAL V EGL+LA  + +  +EVE DS+++  LLN+     + +G I+E+I E+S    F  F W  R
Subjt:  MKGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNR

Query:  QTNSLAHSVARASLQ-QDGGIST
        +TN LAH +A   ++  D  +ST
Subjt:  QTNSLAHSVARASLQ-QDGGIST

PRQ37402.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]5.0e-1139.29Show/hide
Query:  GIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQTN
        G+GAVIRNE GE +  LA PF    +   VEAL ++EGL  +  LG+  LEVE D+  II+ L+Q +   TE+G ++E +R + +  +F  +    ++ N
Subjt:  GIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQTN

Query:  SLAHSVARASLQ
         +AH +AR++L+
Subjt:  SLAHSVARASLQ

XP_023889265.1 uncharacterized protein LOC112001321 [Quercus suber]3.2e-1034.07Show/hide
Query:  GAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQTNSL
        G  IR+ +G  +  L+K  P     EI EAL +++G++LAL+LG+  + VE+D+  II  +N++  F  E+G I++ I++IS S  +C F    R  N  
Subjt:  GAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQTNSL

Query:  AHSVARASLQQDGGISTTFLSYVDVISPHAIQIVG
        AH +ARA+  +D G++  +         H I   G
Subjt:  AHSVARASLQQDGGISTTFLSYVDVISPHAIQIVG

XP_023896710.1 uncharacterized protein LOC112008605, partial [Quercus suber]1.1e-1037.5Show/hide
Query:  GIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQTN
        GIG V R+  G+ +  L++  P ++ VE+ EAL  R  +  AL+L L  +E+E DSS++I   N +K  +T  G + +E R++S S++FC F    +  N
Subjt:  GIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQTN

Query:  SLAH
         LAH
Subjt:  SLAH

XP_030945916.1 uncharacterized protein LOC115970418 [Quercus lobata]4.2e-1036.28Show/hide
Query:  KGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQ
        + GIG V+RN KGE +  LA+   +   VE++EAL  R  +   ++LG    E E DS  +   L   +  H+ +GQI+++I  I  SL F  F+   RQ
Subjt:  KGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQ

Query:  TNSLAHSVARASL
         N +AH++AR ++
Subjt:  TNSLAHSVARASL

TrEMBL top hitse value%identityAlignment
A0A2N9ECP4 RNase H domain-containing protein2.4e-1140Show/hide
Query:  KGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQ
        + GIG +IRN +G  M +L++  P+   VE VEA   R  + LALDLG   +EVE DS  I+H L+Q +  +T  G I+ + +  S+SL    F    R 
Subjt:  KGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQ

Query:  TNSLAHSVAR
         N +AHS+A+
Subjt:  TNSLAHSVAR

A0A2N9FRW5 RNase H domain-containing protein8.3e-1239.09Show/hide
Query:  KGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQ
        + G+GA+IRN +GEAM +L +  P+   VE VEA   R  + L LDLGL  +++E DS +II  L QN   +T  G ++ E + ++++L    F    R 
Subjt:  KGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQ

Query:  TNSLAHSVAR
         N++AHS+A+
Subjt:  TNSLAHSVAR

A0A2N9H585 RNase H domain-containing protein9.8e-1340.54Show/hide
Query:  MKGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNR
        MK G GA+IRN +GE M +L +  P+   VE+VEA  VR  + L LDLGL  +++E DS +II  L QN   +T  G ++ E + ++++L    F    R
Subjt:  MKGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNR

Query:  QTNSLAHSVAR
          N++AHS+A+
Subjt:  QTNSLAHSVAR

A0A2N9IYC8 Reverse transcriptase domain-containing protein7.0e-1133.33Show/hide
Query:  KGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQ
        + GIG +IRN +GE M  L++  P+   VE VEA   R  +  A DLG   +++E DS+ I+  +       T  G I+E+IR+I+R L+   F    R+
Subjt:  KGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQ

Query:  TNSLAHSVARASLQQDGGISTTFLSYVDVISP
         N +AH +A+ +     GI+  F ++++ + P
Subjt:  TNSLAHSVARASLQQDGGISTTFLSYVDVISP

A0A2P6QT88 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein2.4e-1139.29Show/hide
Query:  GIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQTN
        G+GAVIRNE GE +  LA PF    +   VEAL ++EGL  +  LG+  LEVE D+  II+ L+Q +   TE+G ++E +R + +  +F  +    ++ N
Subjt:  GIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQTN

Query:  SLAHSVARASLQ
         +AH +AR++L+
Subjt:  SLAHSVARASLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAGGTATCGGAGCAGTGATTCGAAATGAAAAAGGAGAAGCTATGGATACCTTAGCTAAGCCATTTCCATGGATCAAAGAAGTTGAAATCGTTGAAGCCTTAGT
CGTTCGTGAAGGTCTAATTCTGGCGTTAGACTTAGGTTTGGAGCGACTGGAAGTTGAGACAGATTCATCTCAAATCATCCATCTGCTCAACCAAAACAAACAATTTCATA
CAGAAATGGGTCAGATCATGGAAGAAATCAGAGAAATTTCAAGATCGTTAAAGTTTTGCTGCTTTACCTGGTGCAATCGGCAGACGAACTCCCTTGCTCACTCAGTCGCT
AGGGCTTCTCTTCAGCAGGATGGTGGAATATCTACAACATTTTTGTCATATGTCGACGTTATATCTCCTCACGCTATACAAATAGTCGGCACATGTAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAGGTATCGGAGCAGTGATTCGAAATGAAAAAGGAGAAGCTATGGATACCTTAGCTAAGCCATTTCCATGGATCAAAGAAGTTGAAATCGTTGAAGCCTTAGT
CGTTCGTGAAGGTCTAATTCTGGCGTTAGACTTAGGTTTGGAGCGACTGGAAGTTGAGACAGATTCATCTCAAATCATCCATCTGCTCAACCAAAACAAACAATTTCATA
CAGAAATGGGTCAGATCATGGAAGAAATCAGAGAAATTTCAAGATCGTTAAAGTTTTGCTGCTTTACCTGGTGCAATCGGCAGACGAACTCCCTTGCTCACTCAGTCGCT
AGGGCTTCTCTTCAGCAGGATGGTGGAATATCTACAACATTTTTGTCATATGTCGACGTTATATCTCCTCACGCTATACAAATAGTCGGCACATGTAGGTAA
Protein sequenceShow/hide protein sequence
MKGGIGAVIRNEKGEAMDTLAKPFPWIKEVEIVEALVVREGLILALDLGLERLEVETDSSQIIHLLNQNKQFHTEMGQIMEEIREISRSLKFCCFTWCNRQTNSLAHSVA
RASLQQDGGISTTFLSYVDVISPHAIQIVGTCR