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Tan0020512 (gene) of Snake gourd v1 genome

Gene IDTan0020512
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG07:28478948..28479265
RNA-Seq ExpressionTan0020512
SyntenyTan0020512
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-1247.06Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+  S  + AS+ Y GPITRSRSKG+    D+  + VA  + K L E+ K+ IVIK+NPL+D S  A +  K+  + D+MSVMMAD+    +MAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        +K
Subjt:  KK
KAA0054593.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-1249.02Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+V S    AS+ Y GPITRSRSKG+    D+  + V + L +L+ E+ KA IVIK NPL+D S  A +  K+  + D+MSVMMAD+  + +MAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        KK
Subjt:  KK
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-1449.02Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+  S  + ASN Y GPITRSRSKG+    D+  + VA  + K L E+ KA IVIK+NPL+D S  + +  K+  + D+MSVMMAD+ P+ +MAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        +K
Subjt:  KK
TYK05006.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1247.06Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+  S  + A++ Y GPITRSR KG+    D+  + VA  + K L E+ KA IVIK+NPL+D S  A +  K+  + D+MSVMMAD+  + SMAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        +K
Subjt:  KK
TYK28164.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.6e-1246.08Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+V S  + AS+ Y GPIT SR KG+    D+  + VA  + K L E+ KA IVIK+NPL+D S  A +  K+  + D+MS+MMAD+  + +MAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        +K
Subjt:  KK
TrEMBL top hitse value%identityAlignment
A0A5A7UF60 Ty3-gypsy retrotransposon protein5.5e-1349.02Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+V S    AS+ Y GPITRSRSKG+    D+  + V + L +L+ E+ KA IVIK NPL+D S  A +  K+  + D+MSVMMAD+  + +MAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        KK
Subjt:  KK
A0A5D3BY54 Ty3-gypsy retrotransposon protein1.0e-1449.02Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+  S  + ASN Y GPITRSRSKG+    D+  + VA  + K L E+ KA IVIK+NPL+D S  + +  K+  + D+MSVMMAD+ P+ +MAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        +K
Subjt:  KK
A0A5D3C3J8 Ty3-gypsy retrotransposon protein1.2e-1247.06Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+  S  + A++ Y GPITRSR KG+    D+  + VA  + K L E+ KA IVIK+NPL+D S  A +  K+  + D+MSVMMAD+  + SMAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        +K
Subjt:  KK
A0A5D3DC86 Ty3-gypsy retrotransposon protein2.1e-1247.06Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+  S  + AS+ Y GPITRSRSKG+    D+  + VA  + K L E+ K+ IVIK+NPL+D S  A +  K+  + D+MSVMMAD+    +MAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        +K
Subjt:  KK
A0A5D3DXA8 Ty3-gypsy retrotransposon protein2.7e-1246.08Show/hide
Query:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE
        M SK+V S  + AS+ Y GPIT SR KG+    D+  + VA  + K L E+ KA IVIK+NPL+D S  A +  K+  + D+MS+MMAD+  + +MAE+E
Subjt:  MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVE

Query:  KK
        +K
Subjt:  KK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATCAAAGGAAGTTACATCAACTGTTGCTGCTGCAAGCAACATCTACATGGGGCCGATAACTCGTAGTCGTTCCAAAGGGGTCGAGACAAGCGATGATCGAACTCC
TGATGCAGTGGCAAACCACCTCACCAAATTACTGAATGAAGCTTCCAAAGCTAAGATTGTCATCAAAGACAACCCCTTGTTTGACCAATCAGCTCCTGCTCCAAATCCAT
TGAAGGAGACGCTAAATCAAGATATAATGTCAGTCATGATGGCTGATGTAGACCCTGATGAAAGTATGGCGGAAGTGGAGAAAAAATCAATCTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAATCAAAGGAAGTTACATCAACTGTTGCTGCTGCAAGCAACATCTACATGGGGCCGATAACTCGTAGTCGTTCCAAAGGGGTCGAGACAAGCGATGATCGAACTCC
TGATGCAGTGGCAAACCACCTCACCAAATTACTGAATGAAGCTTCCAAAGCTAAGATTGTCATCAAAGACAACCCCTTGTTTGACCAATCAGCTCCTGCTCCAAATCCAT
TGAAGGAGACGCTAAATCAAGATATAATGTCAGTCATGATGGCTGATGTAGACCCTGATGAAAGTATGGCGGAAGTGGAGAAAAAATCAATCTCCTGA
Protein sequenceShow/hide protein sequence
MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKKSIS