; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0020524 (gene) of Snake gourd v1 genome

Gene IDTan0020524
OrganismTrichosanthes anguina (Snake gourd v1)
Description40S ribosomal protein S24
Genome locationLG04:20121808..20131722
RNA-Seq ExpressionTan0020524
SyntenyTan0020524
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588329.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia]9.8e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

XP_004139219.1 40S ribosomal protein S24-1 [Cucumis sativus]2.2e-6497.81Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

XP_004142519.1 40S ribosomal protein S24-1 [Cucumis sativus]2.0e-6599.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

XP_008462725.1 PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]7.5e-6599.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

XP_022933090.1 40S ribosomal protein S24-1-like [Cucurbita moschata]9.8e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

TrEMBL top hitse value%identityAlignment
A0A0A0LYE3 40S ribosomal protein S249.5e-6699.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

A0A1S3CHL4 40S ribosomal protein S243.6e-6599.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

A0A5D3E1B6 40S ribosomal protein S243.6e-6599.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

A0A6J1F3Y6 40S ribosomal protein S244.7e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

A0A6J1I401 40S ribosomal protein S244.7e-6598.54Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

SwissProt top hitse value%identityAlignment
P62847 40S ribosomal protein S244.4e-3663.78Show/hide
Query:  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ +IDVLHPG+  V K E++EKLA++Y     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKTKASDAAK
        RKQ KERKNR KK+RG  K       K
Subjt:  RKQMKERKNRAKKIRGVKKTKASDAAK

P62848 40S ribosomal protein S244.4e-3663.78Show/hide
Query:  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ +IDVLHPG+  V K E++EKLA++Y     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKTKASDAAK
        RKQ KERKNR KK+RG  K       K
Subjt:  RKQMKERKNRAKKIRGVKKTKASDAAK

Q8LC83 40S ribosomal protein S24-25.4e-5886.36Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q962Q6 40S ribosomal protein S242.1e-3862.88Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        M +   TIRTRKFMTNRLL+RKQ + DVLHPG+P VSK E++EKLA++Y V   + +FVF F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K   +RKQ KERKNR KK+RG KK+K   AAK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q9SS17 40S ribosomal protein S24-19.8e-6089.39Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein7.0e-6189.39Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

AT5G28060.1 Ribosomal protein S24e family protein3.8e-5986.36Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTCATCATTGATGTTCTTCACCCAGGAAGACCAAACGTCTC
TAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTCTTTAAGTTCCGGACTCACTTTGGAGGTGGAAAATCTACTGGGT
TCGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATACGAGCCCAAGTACAGACTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAA
GAGAGGAAGAACAGAGCCAAAAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGATGCTGCCAAGGGTGGAAAGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAACATAGGTGGCCCTTGAATGAATGATAGCTTCGAAGAAAAGTTCATAAAAATAAATAACCCCAGCATTATATGCTCTAGGGTTTCATTATCGTCAAAGT
CTCTTCTGCAGAAACTTTGTTGCGCTTCGCTGCACTCTATTCCTCACCTTCACTCTATTCCTCACCACAATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCAT
GACCAACCGGCTTCTCTCCAGGAAGCAATTCATCATTGATGTTCTTCACCCAGGAAGACCAAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATG
TGAAGGATGCAAATGCAATTTTTGTCTTTAAGTTCCGGACTCACTTTGGAGGTGGAAAATCTACTGGGTTCGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATAC
GAGCCCAAGTACAGACTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAAGAGAGGAAGAACAGAGCCAAAAAGATTCGTGGAGTAAAGAA
AACAAAGGCCTCAGATGCTGCCAAGGGTGGAAAGAAGAAATGAGTCTACTGTTGGGGTTTTGTGCCTCTGCCTTTTTCTCTCTCATTTCTTTATACCATCTTTTGCTCTC
TAAATTTTAATTCTTAAGTGGTTTTAGGCGCTTTTGAAGTAAAATCTGTCTGGAGAATTGTTGACACCAATATTTTAGCCATTAATTGCAATTTGGGAGTGTTTGCAAGG
AACAATTTTGACATTAGTAAACATATAATTTCATTTCAATTTTATTTGGTGGGGTTTTCTGCCAAATTTTTATTCTTCATAAGCTGTAGTATTTCCCTTGAGAGAGATTA
GGGTAAGAGGAATTTGAAAAGGTAATAGAAGTATGAACAAGTGCAGGTGGTGGTGATGACTAGATTTCTCAAGCGCATGTATTTTCTTTTTCATGGTTAAAACTGAAATA
CTTACAAAATTATCAAGTTTTAGGAGTGACAAGTTTTTTTAGCTTTAAGTGCTTTGTAAGTGTGTTTTTGGTCCCAAGTATTTTGATTAGAAGACAGTTTTAGTTGTGTG
AACCGAACTTGAAAGTGGCATTTTTTATCTAACAAAATTTATAAATTTTATTCATTTGAATGAGT
Protein sequenceShow/hide protein sequence
MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMK
ERKNRAKKIRGVKKTKASDAAKGGKKK