; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0020555 (gene) of Snake gourd v1 genome

Gene IDTan0020555
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRRM domain-containing protein
Genome locationLG08:71993996..71995851
RNA-Seq ExpressionTan0020555
SyntenyTan0020555
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3954402.1 hypothetical protein CMV_020245 [Castanea mollissima]2.9e-1975.71Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GLNKRTTSEKL EAFSKFGEVV ARVV D  SG+SKGFGFV YATLE+AEKGMKGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

XP_023905526.1 organelle RRM domain-containing protein 2, mitochondrial-like [Quercus suber]2.9e-1975.71Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GLNKRTTSEKL EAFSKFGEVV ARVV D  SG+SKGFGFV YATLE+AEKGMKGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

XP_030926955.1 organelle RRM domain-containing protein 2, mitochondrial-like [Quercus lobata]2.9e-1975.71Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GLNKRTTSEKL EAFSKFGEVV ARVV D  SG+SKGFGFV YATLE+AEKGMKGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

XP_030927597.1 organelle RRM domain-containing protein 2, mitochondrial-like isoform X1 [Quercus lobata]2.9e-1975.71Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GLNKRTTSEKL EAFSKFGEVV ARVV D  SG+SKGFGFV YATLE+AEKGMKGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

XP_042940066.1 organelle RRM domain-containing protein 2, mitochondrial-like isoform X1 [Carya illinoinensis]5.0e-1972.86Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GLNKRTTSEKL E+F+KFGEVV ARVV D NSG+SKGFGFV YATLE+AEKG+KGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

TrEMBL top hitse value%identityAlignment
A0A2I4FI37 organelle RRM domain-containing protein 2, mitochondrial-like9.2e-1971.43Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GLNKRTTSEKL E F+KFGEVV ARVV D NSG+SKGFGFV YAT+E+AEKG+KGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

A0A5E4F3C2 PREDICTED: glycine-rich RNA-binding2.0e-1871.43Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        AGLNKRTT EKL EAFS+FGEVV  +VV D +SGFSKGFGFV YATLE+AEKG+KGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

A0A6J5XUP6 RRM domain-containing protein2.0e-1871.43Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        AGLNKRTT EKL EAFS+FGEVV  +VV D +SGFSKGFGFV YATLE+AEKG+KGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

A0A7N2M600 RRM domain-containing protein1.4e-1975.71Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GLNKRTTSEKL EAFSKFGEVV ARVV D  SG+SKGFGFV YATLE+AEKGMKGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

A0A7N2M6U1 RRM domain-containing protein1.4e-1975.71Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GLNKRTTSEKL EAFSKFGEVV ARVV D  SG+SKGFGFV YATLE+AEKGMKGMDAQ + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

SwissProt top hitse value%identityAlignment
Q28IQ9 Cold-inducible RNA-binding protein1.8e-0842.03Show/hide
Query:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        GLN  TT E L + FSK+G+V +  VV D  S  S+GFGFV +   E+A+  M  M+ +++ G +I +D
Subjt:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

Q9FFZ6 Small RNA-binding protein 11, chloroplastic9.8e-1046.38Show/hide
Query:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        GL+  TT + L EAFSK G+VV+A++V D  S  SKGFGFV +A+ +EA+K +   + Q + G  I +D
Subjt:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial9.1e-1658.57Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GL+KRTTSE L  AF++FGEV  A+VV D  SG+SKGFGFVRYATLE++ KG+ GMD + + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

Q9FZ84 Glycine-rich RNA-binding protein 6, mitochondrial3.1e-0846.03Show/hide
Query:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQG
        GL+  T  E L EAF  FG++V A VV D  SG S+GFGFV Y ++E A   M+ M  + + G
Subjt:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial4.1e-0838.57Show/hide
Query:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLDI
        GL+  T    L +AF+ FGEV +A V+AD  +G S+GFGFV ++  + A   +K MD + + G +I +++
Subjt:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLDI

Arabidopsis top hitse value%identityAlignment
AT1G18630.1 glycine-rich RNA-binding protein 62.2e-0946.03Show/hide
Query:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQG
        GL+  T  E L EAF  FG++V A VV D  SG S+GFGFV Y ++E A   M+ M  + + G
Subjt:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQG

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.6e-1552.86Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GL++ TT+EKL +AF+ FG++V ARV+ D +SG SKGFGFV YAT+E+AEK    M+A+ + G  I +D
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

AT3G23830.1 glycine-rich RNA-binding protein 42.9e-0938.57Show/hide
Query:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLDI
        GL+  T    L +AF+ FGEV +A V+AD  +G S+GFGFV ++  + A   +K MD + + G +I +++
Subjt:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLDI

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein6.9e-1146.38Show/hide
Query:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        GL+  TT + L EAFSK G+VV+A++V D  S  SKGFGFV +A+ +EA+K +   + Q + G  I +D
Subjt:  GLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-1758.57Show/hide
Query:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD
        +GL+KRTTSE L  AF++FGEV  A+VV D  SG+SKGFGFVRYATLE++ KG+ GMD + + G  I  +
Subjt:  AGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCTTTGATGATGCAGGGCTGAATAAGAGAACTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATTTGGTGAAGTTGTTCAGGCCAGGGTTGTGGCCGACCA
TAATTCTGGATTCTCAAAAGGCTTTGGTTTTGTAAGATATGCTACCTTAGAAGAAGCAGAGAAAGGAATGAAAGGGATGGACGCACAGAATATGCAAGGCCTAGAAATCC
TCCTGGATATTCATCTTCTCCACATAATTACCGATCTGATAGATGATAGATTCGAGATTCTTAAACTCATCCATTTGGTTGGTTCAGATTTTGGAGATTTGCTGATCAAC
TGA
mRNA sequenceShow/hide mRNA sequence
TTCAGCGACCCTTTTCGTCTCCGGTAATCATTTTATCGTTCTTTCTTGTTCTAAATTTTTTATGTCAATTTTCTTTTCTTTCTGATTATACATTTTTGTATGCATATAAG
TGACTGGGTATGAATACAGATTACATGTGTAGCTTACAAACCACTAGAGATGTTTGAGGTTTACTTTTCTTCCCACTGATCCAATTATTTAAATTTCAGAATAAATTTTC
ATGGGCTGTTTTCAATATCTTTAAAAAGAAGAAGAGAGACTCGATCTTTTTGTATCTGCCTATACTCTGCACACTGAAGGATTAAAACGTCAATATCTAGATTAGACTTG
AGCCCTAAAAAATATTGATATGGTAAATCAAAAAATTTATGCAAATGATTGAAATTAATAATTATGTTTCTATTCACTTCCCAAATAAGTTGTATTATTTGTATTCATGT
TCATATGGTGAATAATGATGATATTTTTTATGCTTCATAGATATTTATACGAGATATCTTCTTGAATCTAATTGCGAACCCTTTGATTTACGGCATATCCTTTTATAGGC
TTTGATGGGATTCTACCATTGTTTAACTGCATATTCATGGGATTCTTTGATGATGCAGGGCTGAATAAGAGAACTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATT
TGGTGAAGTTGTTCAGGCCAGGGTTGTGGCCGACCATAATTCTGGATTCTCAAAAGGCTTTGGTTTTGTAAGATATGCTACCTTAGAAGAAGCAGAGAAAGGAATGAAAG
GGATGGACGCACAGAATATGCAAGGCCTAGAAATCCTCCTGGATATTCATCTTCTCCACATAATTACCGATCTGATAGATGATAGATTCGAGATTCTTAAACTCATCCAT
TTGGTTGGTTCAGATTTTGGAGATTTGCTGATCAACTGA
Protein sequenceShow/hide protein sequence
MGFFDDAGLNKRTTSEKLGEAFSKFGEVVQARVVADHNSGFSKGFGFVRYATLEEAEKGMKGMDAQNMQGLEILLDIHLLHIITDLIDDRFEILKLIHLVGSDFGDLLIN