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Tan0020599 (gene) of Snake gourd v1 genome

Gene IDTan0020599
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG06:25833646..25836078
RNA-Seq ExpressionTan0020599
SyntenyTan0020599
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040828.1 polyprotein [Cucumis melo var. makuwa]5.2e-2248.48Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.3e-2248.48Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.5e-0239.18Show/hide
Query:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVT-PMRPSISPTTPSSSQQGSSIPTTFVEAVNP
        S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+ P+  T P + + SP   SS       P+++ + V P
Subjt:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVT-PMRPSISPTTPSSSQQGSSIPTTFVEAVNP

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.3e-2248.48Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.5e-0239.18Show/hide
Query:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVT-PMRPSISPTTPSSSQQGSSIPTTFVEAVNP
        S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+ P+  T P + + SP   SS       P+++ + V P
Subjt:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVT-PMRPSISPTTPSSSQQGSSIPTTFVEAVNP

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.0e-2248.48Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

TYK28077.1 polyprotein [Cucumis melo var. makuwa]5.2e-2249.49Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V IQ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

TrEMBL top hitse value%identityAlignment
A0A5A7TBK1 Retrotransposable element Tf21.1e-2248.48Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

A0A5A7TBK1 Retrotransposable element Tf21.7e-0239.18Show/hide
Query:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVT-PMRPSISPTTPSSSQQGSSIPTTFVEAVNP
        S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+ P+  T P + + SP   SS       P+++ + V P
Subjt:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVT-PMRPSISPTTPSSSQQGSSIPTTFVEAVNP

A0A5A7TBK1 Retrotransposable element Tf21.1e-2248.48Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

A0A5A7TD15 Polyprotein2.5e-2248.48Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

A0A5A7UVN1 Retrotransposable element Tf22.5e-2248.48Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

A0A5D3D2Q6 Retrotransposable element Tf21.7e-0239.18Show/hide
Query:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVT-PMRPSISPTTPSSSQQGSSIPTTFVEAVNP
        S+ KSP  SS  P+PMSA+ YAMDL F QV+R R  SA   +    +S + PP P  +L+ P+  T P + + SP   SS       P+++ + V P
Subjt:  SKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVT-PMRPSISPTTPSSSQQGSSIPTTFVEAVNP

A0A5D3D2Q6 Retrotransposable element Tf21.9e-2248.48Show/hide
Query:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN
        FGLS+EIF V +Q S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++
Subjt:  FGLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGATCAGCGAGGCAAAGCCTTATCTTCAAAGGGCAAAAGCCCAACCTCTTCTTCAAACATCCCAGCTCCCATGAGCGCCGATCAATACGCAATGGATCTGGGTTT
CACTCAGGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTG
CCGTTACACCAATGAGACCTTCCATCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAACCTTTGTTGAAGCCGTCAATCCTCCCAAAAGTTTC
GGCCTATCAAAGGAAATCTTCCTAGTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGCGTTTTTGTTTATACTT
TCAAACCCCTTGGATATTCTGTTGGAATTTCCAAATCAATACTTACACCTATTACAAACAAATCGTGAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTC
ACGCAAGAATCAAAGAAGTAAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGATGTGCATTATTGTAAAGAATTGAATCTTTTA
CTTTTCGTACATTTTGTTTTTTGTAATCATTTTATCTTTTGTCATATCAATCCAATCAGGGGTCTTCTGGTTGGTAAAGGTTGTGTTCCCGGCAGCAAGTGTAAGTCCGT
TGGTAAGCTCCTGTTCCCCAGTAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGATCAGCGAGGCAAAGCCTTATCTTCAAAGGGCAAAAGCCCAACCTCTTCTTCAAACATCCCAGCTCCCATGAGCGCCGATCAATACGCAATGGATCTGGGTTT
CACTCAGGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTG
CCGTTACACCAATGAGACCTTCCATCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAACCTTTGTTGAAGCCGTCAATCCTCCCAAAAGTTTC
GGCCTATCAAAGGAAATCTTCCTAGTTCCTATTCAAGAATCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGCGTTTTTGTTTATACTT
TCAAACCCCTTGGATATTCTGTTGGAATTTCCAAATCAATACTTACACCTATTACAAACAAATCGTGAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTC
ACGCAAGAATCAAAGAAGTAAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGATGTGCATTATTGTAAAGAATTGAATCTTTTA
CTTTTCGTACATTTTGTTTTTTGTAATCATTTTATCTTTTGTCATATCAATCCAATCAGGGGTCTTCTGGTTGGTAAAGGTTGTGTTCCCGGCAGCAAGTGTAAGTCCGT
TGGTAAGCTCCTGTTCCCCAGTAACTAG
Protein sequenceShow/hide protein sequence
MSDQRGKALSSKGKSPTSSSNIPAPMSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSISPTTPSSSQQGSSIPTTFVEAVNPPKSF
GLSKEIFLVPIQESFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHARIKEVKQWFADNGYLQDLSKKKNADVHYCKELNLL
LFVHFVFCNHFIFCHINPIRGLLVGKGCVPGSKCKSVGKLLFPSN