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Tan0020601 (gene) of Snake gourd v1 genome

Gene IDTan0020601
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA-directed RNA polymerase II subunit RPB2
Genome locationLG07:70666345..70668120
RNA-Seq ExpressionTan0020601
SyntenyTan0020601
Gene Ontology termsGO:0032774 - RNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60447.1 hypothetical protein Csa_002577 [Cucumis sativus]1.6e-1988.33Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
        M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRG S  DSSS TPHS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
XP_004148372.3 uncharacterized protein LOC101212897 [Cucumis sativus]1.6e-1988.33Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
        M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRG S  DSSS TPHS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
XP_022156252.1 uncharacterized protein LOC111023182 [Momordica charantia]4.2e-2091.67Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSNSDSS A  +S
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
XP_022973256.1 uncharacterized protein LOC111471813 [Cucurbita maxima]5.5e-2096.55Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSN DSSSATP
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP
XP_023553989.1 uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]3.8e-2196.55Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSS+SDSSSATP
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP
TrEMBL top hitse value%identityAlignment
A0A0A0LIB2 Uncharacterized protein7.7e-2088.33Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
        M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRG S  DSSS TPHS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
A0A5A7TAA3 Putative membrane lipoprotein1.3e-1990Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRG S SDSSS TP S
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
A0A6J1DRK3 uncharacterized protein LOC1110231822.0e-2091.67Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSNSDSS A  +S
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
A0A6J1F0E3 uncharacterized protein LOC1114380561.0e-1994.83Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSN DSSSA P
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP
A0A6J1I859 uncharacterized protein LOC1114718132.6e-2096.55Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSN DSSSATP
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G17085.1 Putative membrane lipoprotein8.4e-1975Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS
        M+KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LIE+LRRG SNSDS   TPHS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAATCCTTCACTCTGATTCAGACCATTGCAACTGCTGGAGCTTTCTCTGCGATTTCCTTCTGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGGAAGGACTT
GGGAGATTTGATTGAAGATCTACGCCGCGGAAGCTCCAACTCCGATTCTTCTTCTGCAACTCCTCATTCTTGA
mRNA sequenceShow/hide mRNA sequence
AAATTATTCAAAGTCCAAAACATTCGACCTCATTGAGCCTAAGCTACTCAAAGGCCCAAACGAATCAACCTCTCTCTGGGCCTAAATTGTCCAAGTCCAAGCCCAAAACG
AATATACCCCTCTCTTTCTTCTTCTGCCATCTCATTCGGTGAAAACCAGAGGAATGTCCTGAATCGAGCGTCAAATTCTCGAGAAACTGAAATGGAGAAATCCTTCACTC
TGATTCAGACCATTGCAACTGCTGGAGCTTTCTCTGCGATTTCCTTCTGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGGAAGGACTTGGGAGATTTGATTGAAGAT
CTACGCCGCGGAAGCTCCAACTCCGATTCTTCTTCTGCAACTCCTCATTCTTGACTTGGCACTGTACTTTCCTTCAATATGATTCGATCATTTGCAAGTATGTTTTGAAG
TATGTTGGTGATTAAGGAGGCATCGAGTGCTTGGCAAGTAAAGGATTTCCAGCCAAAAGTTCGGATTAATATTTCCTAAATTTTTCTTGAAGTTGGCGATTCTTGTGTAG
AAATAAATACATGCAAATGCGAAAGTGCAGCCGATCAATGTTTTCTAGAAATTTCCTCCTGTGGTTGAATTCTTTTTCTGTGCTCGAAATTGTGTTCTTGGATAATACTC
TTTTCTTTTCTAGAAATTTTCCTTGGGAAGGTACATGGAAGCAAGTCTTTTTACGATTTGGATGACATCTTCGTGGTATTTAGGCAATTGGAAGTAAAACAGAGGTATGC
TTTTTTCACATCTCGATGTTTTCCTCATTGATCTTTCATAAAGAAAAGAACGACAACCATGAATAGACACTGTCTCCAGCTAAAAGATTCTCTGCTAAAAGTTATAAAAA
CGATGCTTCAAGCAGAGACAAGGAAGAAGAGGGAATTTAATGGCAGAAACTTAGAGGAGGACGGTTTTTTCTTTAGATAAAGTGGAGAAATGCGTTCTCTTCTCAACAAT
CCTACCATCAAGGATGAAGATAACGAAGTTATATTAAATAGAATGAATTGGAAGTTGAACTTTTCTTTTTTATTAGATCAACAACCTTAGAGGGGAGAGGATTCGAATTA
CTGACTTCTTGGTCGATGATACATCTCAATTACCTCTTATTTTGGTGAAACTGAACCGTTTTGCTTGATAAAGAGTTTTCATTTTTCATTTTTCTCTTTTATGTTGCTTT
AAGTCGTTAGCTCATATGTGAGTTTTTGTATTGTTGTCCTACAGAAACTGTACCAATTGACTGAATGATATGTTGGTCTCGTAGCACCTGATTTCTACCTGTGGTAAATT
AATACTCATTATATTTTTTACAAACCTATTTTGGTGTAAATCATACTTCCCCCCTTAATTATAATTTTAATTTTTGGATTGGAACTTTG
Protein sequenceShow/hide protein sequence
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS