CuGenDBv2

Gene ID	Tan0020642
Organism	Trichosanthes anguina (Snake gourd v1)
Description	mediator of RNA polymerase II transcription subunit 28
Genome location	LG01:6207378..6209936
RNA-Seq Expression	Tan0020642
Synteny	Tan0020642
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

1.4e-66

95.74

Show/hide

Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KN+IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

1.6e-65

95.74

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

2.6e-65

95.74

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MA+RQP+DQQHQLDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLKNDIIKK ERLIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

1.4e-66

96.45

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+Q+DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

8.2e-67

97.16

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQH LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLKN+IIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

6.8e-67

95.74

Show/hide

Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KN+IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

7.5e-66

95.74

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

7.5e-66

95.74

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

6.8e-67

96.45

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+Q+DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

6.8e-67

96.45

Show/hide

Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+Q+DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

1.7e-38

63.7

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Query:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL
        P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL
Subjt:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL

Query:  KLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        K K+++IKK  RL +  +K +K+Q++KH +ELEKV
Subjt:  KLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

1.2e-39

63.7

Show/hide

Query:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL
        P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL
Subjt:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL

Query:  KLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        K K+++IKK  RL +  +K +K+Q++KH +ELEKV
Subjt:  KLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Sequences

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CDS sequence

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ATGGCTGAACGACAACCACTCGACCAACAGCATCAACTTGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCAGC
TCTGCTTCCGTGCTTGCCTGCAAGAGAACTACAAGCAATAGATCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTCGGGATTTTATGGAGGCAGCTA
AAAAGCTTCAATTGTACTTCATTGGTTTACAACGTGAGGATCAACCAACTAAGGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAATTAAAGAAT
GACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACATAACAATGAGCTAGAGAAGGTTTAG

mRNA sequence

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CAAAACAAAACCTAGATAACTGCTTTGCTATTGCTCCAAGCCAGGAGGGAGACCCGCCGGAGGCCTCGGCGGCTCAGAATCAACAGTAAAACCTGAAGAATTCAGGTGGA
AGAGGCTCTATATTTCACTTTGAATTGGTTGTGAATTGAAGCCCAAAACTGTGCATTCCCTTAAACGATTGCAGATTTCCAATTACTGCAAGAAGAAGAAACTCAGGCGT
GATTTCCTTTGGAGCGAGCTCATCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGAATATGGCTGAACGACAACCACTCGACCAACAGCATCAACTTGATCCACAGT
TGCAATCCTCGCAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCAGCTCTGCTTCCGTGCTTGCCTGCAAGAGAACTACAAGCAATAGATCGTTCT
CCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTCGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTGTACTTCATTGGTTTACAACGTGAGGATCAACCAAC
TAAGGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAATTAAAGAATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATT
TGAAAGACCAGTTAGACAAACATAACAATGAGCTAGAGAAGGTTTAGTAGCACGCTTGCAATGCTCTCTGTTCTATTGTTTAGTTATTTGTAGATCTGTACTCAAAAAAC
AAAAAAAAGTTATTTGTAGATCATGTCAATTACATTCACAATTAATATAAGGTGGAATTGTTGGC

Protein sequence

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MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKN
DIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Tan0020642 (gene) of Snake gourd v1 genome