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Tan0020672 (gene) of Snake gourd v1 genome

Gene IDTan0020672
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionER membrane protein complex subunit 6
Genome locationLG10:10294313..10296859
RNA-Seq ExpressionTan0020672
SyntenyTan0020672
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0072546 - ER membrane protein complex (cellular component)
InterPro domainsIPR008504 - ER membrane protein complex subunit 6
IPR029008 - Rab5-interacting protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597582.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]8.3e-4685.12Show/hide
Query:  RTPAEAMTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQIL
        +TP EAM GYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+GLAAKA FSFHSYFESWNQIL
Subjt:  RTPAEAMTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQIL

Query:  LDGFLSGLMRMFLLIWCGSLD
        LDGFLSGLM  F+L W  + D
Subjt:  LDGFLSGLMRMFLLIWCGSLD

KAG7029026.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma]9.1e-4590.83Show/hide
Query:  RTPAEAMTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQIL
        +TP EAM GYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+GLAAKA FSFHSYFESWNQIL
Subjt:  RTPAEAMTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQIL

Query:  LDGFLSGLM
        LDGFLSGLM
Subjt:  LDGFLSGLM

XP_022137968.1 ER membrane protein complex subunit 6 [Momordica charantia]4.5e-4486.96Show/hide
Query:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS
        M GYSS ASEKKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFI YFLVMAITSLGLAAKA FSFHSYFESWNQILLDGFLS
Subjt:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS

Query:  GLMRMFLLIWCGSLD
        GLM  F+L W  + D
Subjt:  GLMRMFLLIWCGSLD

XP_022972030.1 ER membrane protein complex subunit 6 [Cucurbita maxima]7.7e-4486.96Show/hide
Query:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS
        M GYSS ASEKKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+GLAAKA FSFHSYFESWNQILLDGFLS
Subjt:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS

Query:  GLMRMFLLIWCGSLD
        GLM  F+L W  + D
Subjt:  GLMRMFLLIWCGSLD

XP_038880512.1 ER membrane protein complex subunit 6 [Benincasa hispida]2.4e-4572.19Show/hide
Query:  AVRGTKPYPSPP---RIDHNQLV----IYYRTPAEAMTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFY
        +V+ TK + S P   ++D+  L+    I   T AE   GYSST SEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGL GFIFY
Subjt:  AVRGTKPYPSPP---RIDHNQLV----IYYRTPAEAMTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFY

Query:  FLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIWCGSLD
        F+VMAITSL LA KA FSF SYFESWNQILLDGFLSGLM  F+L W  + D
Subjt:  FLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIWCGSLD

TrEMBL top hitse value%identityAlignment
A0A0A0LZ06 ER membrane protein complex subunit 63.5e-4287.27Show/hide
Query:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS
        M GYSSTAS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTGFIFYFLVMAITS+ LAAKA FSFHSYFES NQIL DGFLS
Subjt:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS

Query:  GLMRMFLLIW
        GLM  F+L W
Subjt:  GLMRMFLLIW

A0A1S3BQB0 ER membrane protein complex subunit 67.1e-4385.22Show/hide
Query:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS
        M GYSSTAS+KKSSD+ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITS+ LAAKA FSFHSYFES NQILLDGFL 
Subjt:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS

Query:  GLMRMFLLIWCGSLD
        GLM  F+L W  + D
Subjt:  GLMRMFLLIWCGSLD

A0A6J1CBS9 ER membrane protein complex subunit 62.2e-4486.96Show/hide
Query:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS
        M GYSS ASEKKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFI YFLVMAITSLGLAAKA FSFHSYFESWNQILLDGFLS
Subjt:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS

Query:  GLMRMFLLIWCGSLD
        GLM  F+L W  + D
Subjt:  GLMRMFLLIWCGSLD

A0A6J1FFH8 ER membrane protein complex subunit 66.4e-4486.09Show/hide
Query:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS
        M GYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+GLAAKA FSFHSYFESWNQILLDGFLS
Subjt:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS

Query:  GLMRMFLLIWCGSLD
        GLM  F+L W  + D
Subjt:  GLMRMFLLIWCGSLD

A0A6J1I7D9 ER membrane protein complex subunit 63.7e-4486.96Show/hide
Query:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS
        M GYSS ASEKKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+GLAAKA FSFHSYFESWNQILLDGFLS
Subjt:  MTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLS

Query:  GLMRMFLLIWCGSLD
        GLM  F+L W  + D
Subjt:  GLMRMFLLIWCGSLD

SwissProt top hitse value%identityAlignment
Q3ZCG8 ER membrane protein complex subunit 62.4e-0838.89Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KAR  ++ YF+S   +   G + GL   ++L W
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW

Q68EU8 ER membrane protein complex subunit 61.0e-0638.55Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW
        ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+   ++ YF+S   +   G + GL   ++L W
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW

Q6GLC5 ER membrane protein complex subunit 67.8e-0738.55Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW
        ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+   ++ YF+S   +   G + GL   ++L W
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW

Q9BV81 ER membrane protein complex subunit 61.2e-0737.78Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA   ++ YF+S   +   G + GL   ++L W
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW

Q9CQW0 ER membrane protein complex subunit 61.2e-0737.78Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA   ++ YF+S   +   G + GL   ++L W
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIW

Arabidopsis top hitse value%identityAlignment
AT5G49540.1 Rab5-interacting family protein1.6e-3163.89Show/hide
Query:  ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFL
        +SEK+S D   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+VM ITS+GL AKA FS   YF+SWN++L DGFL GLM  F+
Subjt:  ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFL

Query:  LIWCGSLD
        L W  + D
Subjt:  LIWCGSLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACGGGGAAGCTCAACTCAACTACAACTACAAGACTCACGGCTGCTACTTAGACGACGCTGTTCGTGGAACAAAGCCGTATCCTTCTCCCCCTCGGATCGATCA
CAATCAACTGGTAATTTACTATCGTACACCGGCAGAAGCTATGACTGGATATTCCTCCACTGCTTCCGAGAAGAAATCGTCTGACGCGGCCGACGATTTACCGATCTTCA
ATGCTGAAAATTTGCAAAACAACTTGAAGATTATATATTACAGCCGGACGTTTTTGTCTATAATCGGTGGAGTAATTGCTGGAATTTTGGGATTCACAGGCCTGACTGGA
TTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGGACTTGCAGCCAAGGCTAGATTCTCGTTTCATTCGTATTTCGAAAGCTGGAACCAGATTCTACTCGATGG
CTTTCTGAGTGGTCTTATGAGGATGTTCTTATTAATTTGGTGTGGATCACTAGATACTTATCCCTTTGCAACTTCCCTTCTGGACACCCGTCTTCAACAACAAATATCTG
TTTGTGGTCCCCTCCTAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACGGGGAAGCTCAACTCAACTACAACTACAAGACTCACGGCTGCTACTTAGACGACGCTGTTCGTGGAACAAAGCCGTATCCTTCTCCCCCTCGGATCGATCA
CAATCAACTGGTAATTTACTATCGTACACCGGCAGAAGCTATGACTGGATATTCCTCCACTGCTTCCGAGAAGAAATCGTCTGACGCGGCCGACGATTTACCGATCTTCA
ATGCTGAAAATTTGCAAAACAACTTGAAGATTATATATTACAGCCGGACGTTTTTGTCTATAATCGGTGGAGTAATTGCTGGAATTTTGGGATTCACAGGCCTGACTGGA
TTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGGACTTGCAGCCAAGGCTAGATTCTCGTTTCATTCGTATTTCGAAAGCTGGAACCAGATTCTACTCGATGG
CTTTCTGAGTGGTCTTATGAGGATGTTCTTATTAATTTGGTGTGGATCACTAGATACTTATCCCTTTGCAACTTCCCTTCTGGACACCCGTCTTCAACAACAAATATCTG
TTTGTGGTCCCCTCCTAAGCTAG
Protein sequenceShow/hide protein sequence
MANGEAQLNYNYKTHGCYLDDAVRGTKPYPSPPRIDHNQLVIYYRTPAEAMTGYSSTASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
FIFYFLVMAITSLGLAAKARFSFHSYFESWNQILLDGFLSGLMRMFLLIWCGSLDTYPFATSLLDTRLQQQISVCGPLLS