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Tan0020686 (gene) of Snake gourd v1 genome

Gene IDTan0020686
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG07:53116237..53116437
RNA-Seq ExpressionTan0020686
SyntenyTan0020686
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035138.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1670.77Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        +SV EYEKK+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1667.69Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        M+V EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
KAA0046777.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.0e-1669.23Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        +SV EYE+K+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
KAA0051348.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-1669.23Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        +SV EYE+K+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.8e-1667.69Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        M+V EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
TrEMBL top hitse value%identityAlignment
A0A5A7SX06 DNA/RNA polymerases superfamily protein8.8e-1770.77Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        +SV EYEKK+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
A0A5A7T1M0 Reverse transcriptase8.8e-1767.69Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        M+V EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
A0A5A7TY03 DNA/RNA polymerases superfamily protein2.0e-1669.23Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        +SV EYE+K+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
A0A5A7U7T7 Reverse transcriptase2.0e-1669.23Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        +SV EYE+K+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
A0A5D3BB91 Reverse transcriptase8.8e-1767.69Show/hide
Query:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
        M+V EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  LRVE+S
Subjt:  MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGACAGATCGATGCAAGAGGTTCGAGGACGGTCTACGAAC
AGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGACATTACGAGTAGAGCGAAGCTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGACAGATCGATGCAAGAGGTTCGAGGACGGTCTACGAAC
AGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGACATTACGAGTAGAGCGAAGCTGGTAG
Protein sequenceShow/hide protein sequence
MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERSW