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Tan0020708 (gene) of Snake gourd v1 genome

Gene IDTan0020708
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationLG02:88694001..88694862
RNA-Seq ExpressionTan0020708
SyntenyTan0020708
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585589.1 hypothetical protein SDJN03_18322, partial [Cucurbita argyrosperma subsp. sororia]7.9e-6089.63Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDRDTVGIDYKRSSSFP A G AE++VFAESDLERK+LEKLKKN
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
        GWW RSNSAFLNEPPVLDGAAKAYAS+YGV DVAS
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
XP_008444729.1 PREDICTED: uncharacterized protein LOC103487979 [Cucumis melo]5.5e-6181.21Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRAIS+PVDRY DR+ VGIDYKRSSSFPPA   A E  F E+ L+RK+LE+L+K 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGAWLH
        GWWTRSNSAFLNEPPVLDGA+KA  S YGVADVAS +LNHNNGVGA LH
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGAWLH
XP_022951681.1 uncharacterized protein LOC111454424 [Cucurbita moschata]5.1e-5988.89Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VD DTVGIDYKRSSSFP A G AE++VFAESDLERK+LEKLKKN
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
        GWW RSNSAFLNEPPVLDGAAKAYAS+YGV DVAS
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
XP_023002545.1 uncharacterized protein LOC111496358 [Cucurbita maxima]6.0e-6089.63Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDRDTVGIDYKRSSSFP A G AE++VFAESDLERK+LEKLKKN
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
        GWW RSNSAFLNEPPVLDGAAKAYAS+YGV DVAS
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
XP_038886573.1 uncharacterized protein LOC120076743 [Benincasa hispida]3.4e-6382.88Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLM GWNSPVLDPKSVKFKRNRSLTK+EIEAYW+SK+K EEEHLRAISMPVDRY+DR+TVGIDYKRSSSFPPA   + E  FAE+DLER++LEKLKK 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGA
        GWWTRSNSAFLNEPPVLDGA K YAS YGVADVAS +LNH+NGVG+
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGA
TrEMBL top hitse value%identityAlignment
A0A1S3BBS7 uncharacterized protein LOC1034879792.6e-6181.21Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRAIS+PVDRY DR+ VGIDYKRSSSFPPA   A E  F E+ L+RK+LE+L+K 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGAWLH
        GWWTRSNSAFLNEPPVLDGA+KA  S YGVADVAS +LNHNNGVGA LH
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGAWLH
A0A5A7VD66 Putative DNA polymerase epsilon catalytic subunit A2.6e-6181.21Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRAIS+PVDRY DR+ VGIDYKRSSSFPPA   A E  F E+ L+RK+LE+L+K 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGAWLH
        GWWTRSNSAFLNEPPVLDGA+KA  S YGVADVAS +LNHNNGVGA LH
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGAWLH
A0A6J1CTD0 uncharacterized protein LOC1110140331.2e-5881.51Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVD +VDRD VGIDYKRSSSFPPA GTAEE     SD ERK+LEKLK N
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGA
         WWTRSNSAFLNEPPVLDGAAKAYA        AS +LNH+NG+GA
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGA
A0A6J1GI71 uncharacterized protein LOC1114544242.5e-5988.89Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VD DTVGIDYKRSSSFP A G AE++VFAESDLERK+LEKLKKN
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
        GWW RSNSAFLNEPPVLDGAAKAYAS+YGV DVAS
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
A0A6J1KP90 uncharacterized protein LOC1114963582.9e-6089.63Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDRDTVGIDYKRSSSFP A G AE++VFAESDLERK+LEKLKKN
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKN

Query:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
        GWW RSNSAFLNEPPVLDGAAKAYAS+YGV DVAS
Subjt:  GWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein2.6e-1638.69Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRK-LEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKK
        MGSLM GW+S V DPKSV  +R +SLT+EEI+ +W++K+K  EEEH++A S  V +                   A   A+EK   +   E +S    K 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRK-LEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKK

Query:  NGWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASV
        +GWW ++  AFLNEP   +G    Y S++ VA +A +
Subjt:  NGWWTRSNSAFLNEPPVLDGAAKAYASRYGVADVASV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTAATGGGGGGATGGAACTCTCCCGTCCTAGATCCTAAATCAGTCAAGTTCAAGAGAAATCGGTCGCTTACGAAGGAGGAAATCGAAGCTTACTGGAGATC
GAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGATTTCTATGCCGGTGGATCGTTATGTTGATCGCGATACGGTCGGAATAGACTACAAAAGATCGAGTTCGTTTCCGC
CGGCGACCGGTACGGCGGAGGAAAAAGTATTTGCAGAGAGCGATTTGGAGAGGAAAAGCCTAGAGAAATTGAAGAAAAATGGCTGGTGGACGAGGAGCAATTCGGCGTTT
CTGAATGAACCGCCGGTGCTTGACGGCGCTGCCAAAGCTTACGCGTCGCGCTACGGCGTCGCCGACGTGGCCTCGGTCAGGTTGAATCACAACAATGGAGTCGGTGCTTG
GTTACACTGA
mRNA sequenceShow/hide mRNA sequence
CTTTCTTTCGCTCTTTTTCTGCGAACCTAAAACTTCAGTGGCAGAAAATGGGTTCTCTAATGGGGGGATGGAACTCTCCCGTCCTAGATCCTAAATCAGTCAAGTTCAAG
AGAAATCGGTCGCTTACGAAGGAGGAAATCGAAGCTTACTGGAGATCGAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGATTTCTATGCCGGTGGATCGTTATGTTGA
TCGCGATACGGTCGGAATAGACTACAAAAGATCGAGTTCGTTTCCGCCGGCGACCGGTACGGCGGAGGAAAAAGTATTTGCAGAGAGCGATTTGGAGAGGAAAAGCCTAG
AGAAATTGAAGAAAAATGGCTGGTGGACGAGGAGCAATTCGGCGTTTCTGAATGAACCGCCGGTGCTTGACGGCGCTGCCAAAGCTTACGCGTCGCGCTACGGCGTCGCC
GACGTGGCCTCGGTCAGGTTGAATCACAACAATGGAGTCGGTGCTTGGTTACACTGAAAGGAAAAAAAGGAAGTTAAAGATATTAATTAGTAGTTTATGTAAAATTATTA
CATTATAAATATGTTTGTATAATTATTGAAAGATTTCTGTTCTGTTTGGCTTGTAAGCTGGAATCTGAAGCTCTGAAT
Protein sequenceShow/hide protein sequence
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDRYVDRDTVGIDYKRSSSFPPATGTAEEKVFAESDLERKSLEKLKKNGWWTRSNSAF
LNEPPVLDGAAKAYASRYGVADVASVRLNHNNGVGAWLH