; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0020740 (gene) of Snake gourd v1 genome

Gene IDTan0020740
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:17132843..17133283
RNA-Seq ExpressionTan0020740
SyntenyTan0020740
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-1548.33Show/hide
Query:  PIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPN-ETSNPDVMSVMMTDADISEEKMVEFEKKINILLKAIEERDYEIV
        P  R+RSREIQ  E               K  + + VI EN    +    S + N E S P++MSVM+TD D SE++M E EKK+N+L+KA+EERD+EI 
Subjt:  PIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPN-ETSNPDVMSVMMTDADISEEKMVEFEKKINILLKAIEERDYEIV

Query:  SLKNQIESRDAVESSQTPTL
         LKN IESRDA ESS T TL
Subjt:  SLKNQIESRDAVESSQTPTL

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-1542.76Show/hide
Query:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE----------------KSAQADAVIAENLMFGKITFPSFQPNETS-NPDVMSVMMTDADISEEKMVE
        MTS+   SK ++    +  P  R+RSR+IQ  E                K  +   VI EN    +    S + NE +  P++MSVM+TD D SE++M E
Subjt:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE----------------KSAQADAVIAENLMFGKITFPSFQPNETS-NPDVMSVMMTDADISEEKMVE

Query:  FEKKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTLGNKGK
         EKK+N+L+KA+EERD+EI SLKN IESRDA+ESS T  + N  K
Subjt:  FEKKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTLGNKGK

KAA0054593.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1540.54Show/hide
Query:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE
        M SK+VAS +  ++++Y GPI R+RS+ I  E+               +S +A  VI +N ++      S    + ++PDVMSVMM D  + E  M E E
Subjt:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE

Query:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV
        KKIN L+KA+EERD+EI +L+ Q+ +R+  ESSQTP +   +KGK  V
Subjt:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1540.54Show/hide
Query:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE
        M SK+ AS +  ++N+Y GPI R+RS+ I  E+               +S +A  VI EN ++      S +  + ++PDVMSVMM D    E  M E E
Subjt:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE

Query:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV
        +KIN L+KA+EERD+EI++L+ Q+ +R+  ESSQTP +   +KGK  V
Subjt:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV

KAA0065983.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-1540.54Show/hide
Query:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE
        M SK+ AS++  +++ Y GPI RNRS+ I  E+               +S +A  VI EN ++      S +  +  +PDVMSVMMTD   +E  M E E
Subjt:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE

Query:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV
        +KIN L+K +EERD+EI +L+ Q+++R+ VESSQT  +   +KGK  V
Subjt:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV

TrEMBL top hitse value%identityAlignment
A0A5A7TP10 Ty3-gypsy retrotransposon protein1.1e-1548.33Show/hide
Query:  PIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPN-ETSNPDVMSVMMTDADISEEKMVEFEKKINILLKAIEERDYEIV
        P  R+RSREIQ  E               K  + + VI EN    +    S + N E S P++MSVM+TD D SE++M E EKK+N+L+KA+EERD+EI 
Subjt:  PIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPN-ETSNPDVMSVMMTDADISEEKMVEFEKKINILLKAIEERDYEIV

Query:  SLKNQIESRDAVESSQTPTL
         LKN IESRDA ESS T TL
Subjt:  SLKNQIESRDAVESSQTPTL

A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.9e-1542.76Show/hide
Query:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE----------------KSAQADAVIAENLMFGKITFPSFQPNETS-NPDVMSVMMTDADISEEKMVE
        MTS+   SK ++    +  P  R+RSR+IQ  E                K  +   VI EN    +    S + NE +  P++MSVM+TD D SE++M E
Subjt:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE----------------KSAQADAVIAENLMFGKITFPSFQPNETS-NPDVMSVMMTDADISEEKMVE

Query:  FEKKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTLGNKGK
         EKK+N+L+KA+EERD+EI SLKN IESRDA+ESS T  + N  K
Subjt:  FEKKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTLGNKGK

A0A5A7UF60 Ty3-gypsy retrotransposon protein6.6e-1640.54Show/hide
Query:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE
        M SK+VAS +  ++++Y GPI R+RS+ I  E+               +S +A  VI +N ++      S    + ++PDVMSVMM D  + E  M E E
Subjt:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE

Query:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV
        KKIN L+KA+EERD+EI +L+ Q+ +R+  ESSQTP +   +KGK  V
Subjt:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV

A0A5A7VCU1 Ty3-gypsy retrotransposon protein1.5e-1540.54Show/hide
Query:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE
        M SK+ AS++  +++ Y GPI RNRS+ I  E+               +S +A  VI EN ++      S +  +  +PDVMSVMMTD   +E  M E E
Subjt:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE

Query:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV
        +KIN L+K +EERD+EI +L+ Q+++R+ VESSQT  +   +KGK  V
Subjt:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV

A0A5D3BY54 Ty3-gypsy retrotransposon protein6.6e-1640.54Show/hide
Query:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE
        M SK+ AS +  ++N+Y GPI R+RS+ I  E+               +S +A  VI EN ++      S +  + ++PDVMSVMM D    E  M E E
Subjt:  MTSKEVASKTVASNNSYIGPIMRNRSREIQPEE---------------KSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFE

Query:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV
        +KIN L+KA+EERD+EI++L+ Q+ +R+  ESSQTP +   +KGK  V
Subjt:  KKINILLKAIEERDYEIVSLKNQIESRDAVESSQTPTL--GNKGKTSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCCAAAGAAGTTGCTTCAAAGACTGTTGCTTCAAATAACTCCTACATAGGGCCAATCATGCGCAATCGCTCTAGAGAAATCCAACCAGAAGAAAAATCTGCTCA
AGCTGATGCCGTCATCGCAGAAAACCTCATGTTTGGCAAAATCACTTTTCCTTCTTTTCAACCGAACGAAACATCAAACCCTGACGTGATGTCCGTTATGATGACTGATG
CAGACATTAGTGAGGAAAAAATGGTTGAATTTGAAAAGAAGATCAACATATTACTGAAGGCAATTGAAGAAAGAGATTATGAAATCGTTTCTCTCAAGAATCAGATTGAA
AGTCGAGATGCTGTTGAATCAAGTCAGACCCCTACTCTCGGAAATAAGGGAAAGACCTCTGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGACATCCAAAGAAGTTGCTTCAAAGACTGTTGCTTCAAATAACTCCTACATAGGGCCAATCATGCGCAATCGCTCTAGAGAAATCCAACCAGAAGAAAAATCTGCTCA
AGCTGATGCCGTCATCGCAGAAAACCTCATGTTTGGCAAAATCACTTTTCCTTCTTTTCAACCGAACGAAACATCAAACCCTGACGTGATGTCCGTTATGATGACTGATG
CAGACATTAGTGAGGAAAAAATGGTTGAATTTGAAAAGAAGATCAACATATTACTGAAGGCAATTGAAGAAAGAGATTATGAAATCGTTTCTCTCAAGAATCAGATTGAA
AGTCGAGATGCTGTTGAATCAAGTCAGACCCCTACTCTCGGAAATAAGGGAAAGACCTCTGTATAA
Protein sequenceShow/hide protein sequence
MTSKEVASKTVASNNSYIGPIMRNRSREIQPEEKSAQADAVIAENLMFGKITFPSFQPNETSNPDVMSVMMTDADISEEKMVEFEKKINILLKAIEERDYEIVSLKNQIE
SRDAVESSQTPTLGNKGKTSV