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Tan0020801 (gene) of Snake gourd v1 genome

Gene IDTan0020801
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:6706809..6707724
RNA-Seq ExpressionTan0020801
SyntenyTan0020801
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035138.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-0861.4Show/hide
Query:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSR
        A+  ++S+ E +S VE +RG STT+ FRGREQRRFTPG+N+SSRQDFKNR     SR
Subjt:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSR

KAA0037768.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-0961.02Show/hide
Query:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD
        A+  Q+S+ E +S VE +RG ST S FRGREQRRFTPG+N+SSRQDFKNR     SR +
Subjt:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD

KAA0037805.1 uncharacterized protein E6C27_scaffold918G00190 [Cucumis melo var. makuwa]6.0e-0963.16Show/hide
Query:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSR
        A+  ++S+ E +SVVE +RG ST S FRGREQRRFTPG+N+SSRQDFKNR     SR
Subjt:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSR

KAA0054814.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0961.02Show/hide
Query:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD
        A+  ++S+ E +S VE +RG STTS FRGREQRRFTPG+N+SSRQDFKNR     SR +
Subjt:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD

KAA0061627.1 putative polyprotein [Cucumis melo var. makuwa]6.0e-0965.45Show/hide
Query:  QESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD
        Q+S+ E +S VE +RG ST S FRGREQRRFTPGVN+SSRQDFKNR     SR +
Subjt:  QESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD

TrEMBL top hitse value%identityAlignment
A0A5A7T4N0 Reverse transcriptase2.2e-0961.02Show/hide
Query:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD
        A+  Q+S+ E +S VE +RG ST S FRGREQRRFTPG+N+SSRQDFKNR     SR +
Subjt:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD

A0A5A7T8K4 Retrotrans_gag domain-containing protein2.9e-0963.16Show/hide
Query:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSR
        A+  ++S+ E +SVVE +RG ST S FRGREQRRFTPG+N+SSRQDFKNR     SR
Subjt:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSR

A0A5A7TLU6 Reverse transcriptase4.9e-0959.32Show/hide
Query:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD
        A+  ++S+ E +S VE +RG ST S FRGREQRRFTPG+N+SSRQDFKNR     SR +
Subjt:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD

A0A5A7UI35 Reverse transcriptase1.0e-0961.02Show/hide
Query:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD
        A+  ++S+ E +S VE +RG STTS FRGREQRRFTPG+N+SSRQDFKNR     SR +
Subjt:  AISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD

A0A5A7V411 Putative polyprotein2.9e-0965.45Show/hide
Query:  QESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD
        Q+S+ E +S VE +RG ST S FRGREQRRFTPGVN+SSRQDFKNR     SR +
Subjt:  QESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAGTAACCATAGTATGTCTAATATGTTGATATGTTATAGGAGTCATGCCACCATGACGCAAGATCCTACCCATGGTCATTCTGAGAGAGGATCTAGTACCCCGAG
GGTCCAAACTGAGGCCAGAGATGAGCAACATGCCATTTCCTCACAGGAGAGTTTAGCAGAGGCGCAGTCAGTAGTGGAGCCAACTCGTGGGCCTTCAACAACGAGTAGTT
TTCGGGGTCGCGAACAGCGAAGATTCACACCCGGAGTGAATGTTTCAAGTCGTCAAGACTTTAAGAATCGAGTAGCGGCGCCGACATCGAGGCGAGATGAATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAAGTAACCATAGTATGTCTAATATGTTGATATGTTATAGGAGTCATGCCACCATGACGCAAGATCCTACCCATGGTCATTCTGAGAGAGGATCTAGTACCCCGAG
GGTCCAAACTGAGGCCAGAGATGAGCAACATGCCATTTCCTCACAGGAGAGTTTAGCAGAGGCGCAGTCAGTAGTGGAGCCAACTCGTGGGCCTTCAACAACGAGTAGTT
TTCGGGGTCGCGAACAGCGAAGATTCACACCCGGAGTGAATGTTTCAAGTCGTCAAGACTTTAAGAATCGAGTAGCGGCGCCGACATCGAGGCGAGATGAATGTTAG
Protein sequenceShow/hide protein sequence
MLSNHSMSNMLICYRSHATMTQDPTHGHSERGSSTPRVQTEARDEQHAISSQESLAEAQSVVEPTRGPSTTSSFRGREQRRFTPGVNVSSRQDFKNRVAAPTSRRDEC