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Tan0020809 (gene) of Snake gourd v1 genome

Gene IDTan0020809
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L30
Genome locationLG05:7360739..7361177
RNA-Seq ExpressionTan0020809
SyntenyTan0020809
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604875.1 hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia]6.0e-4995.33Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITL RGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMFKARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASA
        APSS S+
Subjt:  APSSASA

KAG7010749.1 rpmD [Cucurbita argyrosperma subsp. argyrosperma]2.3e-4894.44Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITL RG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEM+KARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]1.8e-4894.44Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITL RG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEM+KARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_022947175.1 uncharacterized protein LOC111451121 [Cucurbita moschata]6.0e-4995.33Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITL RGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMFKARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASA
        APSS S+
Subjt:  APSSASA

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]3.5e-4996.3Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITL RG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEM+KARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

TrEMBL top hitse value%identityAlignment
A0A1S3C214 50S ribosomal protein L302.5e-4891.67Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLYITL RG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A5A7VAZ6 50S ribosomal protein L302.5e-4891.67Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLYITL RG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A6J1FUA4 uncharacterized protein LOC1114488488.5e-4994.44Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITL RG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEM+KARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

A0A6J1G641 uncharacterized protein LOC1114511212.9e-4995.33Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITL RGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMFKARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASA
        APSS S+
Subjt:  APSSASA

A0A6J1JDZ2 uncharacterized protein LOC1114841521.9e-4895.37Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITL RGIPGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEM+KARKQKVEQH AL+PPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

SwissProt top hitse value%identityAlignment
A4QBL5 50S ribosomal protein L306.1e-0446.3Show/hide
Query:  LYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT  +G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Subjt:  LYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

A8ZV75 50S ribosomal protein L302.1e-0443.86Show/hide
Query:  SPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        S ++ +TLA+ + G    HR+ L A+ L K NRTV   +TPTV+GM+++V  L+ VE
Subjt:  SPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

C3PL27 50S ribosomal protein L304.7e-0440.74Show/hide
Query:  LYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT  +G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Q8FS51 50S ribosomal protein L303.6e-0446.3Show/hide
Query:  LYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT  +G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Q8NSX3 50S ribosomal protein L303.6e-0446.3Show/hide
Query:  LYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT  +G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Subjt:  LYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein4.9e-3364.22Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNH-L
        M+ F+AFKA VPI WS +LYITL RG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGM+ QVKR+VVVETEEM+ ARK+    HKALRPPLVV+H  
Subjt:  MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNH-L

Query:  PAPSSASAS
        PA  S++ S
Subjt:  PAPSSASAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCTTCAAGGCCTTCAAAGCTAATGTGCCAATTGCATGGAGTCCTAATCTCTATATCACATTAGCGAGAGGCATTCCAGGAACAAGGAGACTTCACAGACGTAC
TTTAGAGGCCTTACGTCTTCGGAAATGCAACCGAACTGTCATGCGCTGGAACACCCCAACTGTTAGAGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAG
AAGAAATGTTTAAAGCCCGTAAACAGAAGGTGGAACAGCACAAGGCTCTTCGACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCTTCTGCTTCT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCCTTCAAGGCCTTCAAAGCTAATGTGCCAATTGCATGGAGTCCTAATCTCTATATCACATTAGCGAGAGGCATTCCAGGAACAAGGAGACTTCACAGACGTAC
TTTAGAGGCCTTACGTCTTCGGAAATGCAACCGAACTGTCATGCGCTGGAACACCCCAACTGTTAGAGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAG
AAGAAATGTTTAAAGCCCGTAAACAGAAGGTGGAACAGCACAAGGCTCTTCGACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCTTCTGCTTCT
TGA
Protein sequenceShow/hide protein sequence
MNAFKAFKANVPIAWSPNLYITLARGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMFKARKQKVEQHKALRPPLVVNHLPAPSSASASAS