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Tan0020827 (gene) of Snake gourd v1 genome

Gene IDTan0020827
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG05:54072520..54072948
RNA-Seq ExpressionTan0020827
SyntenyTan0020827
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]8.7e-1649.47Show/hide
Query:  SRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC
        S  SKRKR +   E+V V+  A +     LK I +WPKEKRATEVE+R+++V  L  IP+L S+ + ++M ILFR ++A E FLS+P +L+LEYC
Subjt:  SRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.0e-1641.73Show/hide
Query:  DINLDSSQEYYVPIPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLY
        D+ LD S +    IP   +QG+    DEM      + +    + S  SKRK+ +   E V V++ A++     LK IA WPKEKRATEVE+R++++  L 
Subjt:  DINLDSSQEYYVPIPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLY

Query:  RIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC
         IPEL SR + +++ ILFR ++A E FLS+P E +LEYC
Subjt:  RIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-1750.48Show/hide
Query:  VGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPEL
        VG ++ RR     SKRKR +   E V V+R AM+     LK IA WPKEKR TEVE+R+++V  L  I EL SR + ++M ILF  ++A E FLS+P EL
Subjt:  VGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPEL

Query:  QLEYC
        +LEYC
Subjt:  QLEYC

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]5.4e-1845.8Show/hide
Query:  IPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSR
        IP   +QG+    DEM           G ++ RR     SKRKR + + E V V+R  M+     LK IA+WPKEKRA EVE+R+Q+V  L  IP+L S+
Subjt:  IPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSR

Query:  AKTQVMNILFRDLQASESFLSVPPELQLEYC
         + ++M ILFR L+A E FLS+P EL+LEYC
Subjt:  AKTQVMNILFRDLQASESFLSVPPELQLEYC

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]9.9e-2043.66Show/hide
Query:  MHEDINLDSSQEYYVPIPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVD
        MHE  + D SQE+            D   DE H TPT      G ++ R SKRK   Y SE+V V ++AMD     LK IAEW K++ ATEVE+R+++V+
Subjt:  MHEDINLDSSQEYYVPIPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVD

Query:  HLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC
         L  IP+L ++ K + MNI+FR++  +ESFLS+P +++LEYC
Subjt:  HLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.6e-1845.8Show/hide
Query:  IPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSR
        IP   +QG+    DEM           G ++ RR     SKRKR + + E V V+R  M+     LK IA+WPKEKRA EVE+R+Q+V  L  IP+L S+
Subjt:  IPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSR

Query:  AKTQVMNILFRDLQASESFLSVPPELQLEYC
         + ++M ILFR L+A E FLS+P EL+LEYC
Subjt:  AKTQVMNILFRDLQASESFLSVPPELQLEYC

A0A5A7SQU2 Putative nuclease HARBI15.0e-1741.73Show/hide
Query:  DINLDSSQEYYVPIPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLY
        D+ LD S +    IP   +QG+    DEM      + +    + S  SKRK+ +   E V V++ A++     LK IA WPKEKRATEVE+R++++  L 
Subjt:  DINLDSSQEYYVPIPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLY

Query:  RIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC
         IPEL SR + +++ ILFR ++A E FLS+P E +LEYC
Subjt:  RIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC

A0A5A7U0H7 Retrotransposon protein2.6e-1845.8Show/hide
Query:  IPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSR
        IP   +QG+    DEM           G ++ RR     SKRKR + + E V V+R  M+     LK IA+WPKEKRA EVE+R+Q+V  L  IP+L S+
Subjt:  IPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSR

Query:  AKTQVMNILFRDLQASESFLSVPPELQLEYC
         + ++M ILFR L+A E FLS+P EL+LEYC
Subjt:  AKTQVMNILFRDLQASESFLSVPPELQLEYC

A0A5D3BZU3 Retrotransposon protein4.2e-1649.47Show/hide
Query:  SRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC
        S  SKRKR +   E+V V+  A +     LK I +WPKEKRATEVE+R+++V  L  IP+L S+ + ++M ILFR ++A E FLS+P +L+LEYC
Subjt:  SRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPELQLEYC

A0A5D3CT52 Retrotransposon protein3.8e-1750.48Show/hide
Query:  VGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPEL
        VG ++ RR     SKRKR +   E V V+R AM+     LK IA WPKEKR TEVE+R+++V  L  I EL SR + ++M ILF  ++A E FLS+P EL
Subjt:  VGASTSRR-----SKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDSRAKTQVMNILFRDLQASESFLSVPPEL

Query:  QLEYC
        +LEYC
Subjt:  QLEYC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACGAAGATATTAACTTGGACAGTTCTCAAGAATACTATGTGCCAATACCACCATTTTCAACTCAAGGAATGGACACGCCTCATGATGAGATGCATGAGACACCTAC
TAGTCGGAACAACACAGTAGGTGCTTCTACATCCAGACGTAGTAAAAGAAAGCGCTCTACTTATCAATCTGAGATCGTTGCTGTGGTACGAGATGCTATGGATGTGAATG
CATCTCACCTAAAGATGATTGCAGAGTGGCCCAAAGAAAAGCGTGCGACGGAGGTAGAAGTACGGTCACAAATTGTGGACCACCTGTATAGGATCCCAGAGTTGGATAGT
CGGGCTAAAACGCAAGTGATGAACATCCTCTTCCGTGATCTCCAAGCATCAGAAAGTTTCTTATCTGTCCCTCCAGAGTTGCAGCTGGAATATTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACGAAGATATTAACTTGGACAGTTCTCAAGAATACTATGTGCCAATACCACCATTTTCAACTCAAGGAATGGACACGCCTCATGATGAGATGCATGAGACACCTAC
TAGTCGGAACAACACAGTAGGTGCTTCTACATCCAGACGTAGTAAAAGAAAGCGCTCTACTTATCAATCTGAGATCGTTGCTGTGGTACGAGATGCTATGGATGTGAATG
CATCTCACCTAAAGATGATTGCAGAGTGGCCCAAAGAAAAGCGTGCGACGGAGGTAGAAGTACGGTCACAAATTGTGGACCACCTGTATAGGATCCCAGAGTTGGATAGT
CGGGCTAAAACGCAAGTGATGAACATCCTCTTCCGTGATCTCCAAGCATCAGAAAGTTTCTTATCTGTCCCTCCAGAGTTGCAGCTGGAATATTGTTAG
Protein sequenceShow/hide protein sequence
MHEDINLDSSQEYYVPIPPFSTQGMDTPHDEMHETPTSRNNTVGASTSRRSKRKRSTYQSEIVAVVRDAMDVNASHLKMIAEWPKEKRATEVEVRSQIVDHLYRIPELDS
RAKTQVMNILFRDLQASESFLSVPPELQLEYC