CuGenDBv2

Gene ID	Tan0020833
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	LG11:6876128..6881566
RNA-Seq Expression	Tan0020833
Synteny	Tan0020833
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602326.1 General transcription factor IIF subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-142

93.84

Show/hide

Query:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA
        MD DDK IDR SSRKL SN++TV GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDP+QSNDDDDSSSTEFTMELA  DSG ALRA
Subjt:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA

Query:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSES QGKFT EGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

XP_022133483.1 general transcription factor IIF subunit 2-like [Momordica charantia]

5.2e-142

93.53

Show/hide

Query:  MDVDDKSIDRCSSRKLQSNNNTV--VGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNAL
        MDVDDK IDRCSSRKLQ+NNN+V   GTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAG DSGN+L
Subjt:  MDVDDKSIDRCSSRKLQSNNNTV--VGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNAL

Query:  RAYSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        R+YSLNMSTDFIPMSVFSES  GKFT EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        E KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

XP_022964851.1 general transcription factor IIF subunit 2-like [Cucurbita moschata]

5.2e-142

93.84

Show/hide

Query:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA
        MD DDK IDR SSRKL SN++T  GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA  DSG ALRA
Subjt:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA

Query:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSES QGKFT EGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

XP_022990432.1 general transcription factor IIF subunit 2-like [Cucurbita maxima]

1.8e-142

94.2

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Query:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA
        MD DDK IDR SSRKL SN++TV GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA  DSG ALRA
Subjt:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA

Query:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSES QGKFT EGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]

1.2e-143

94.91

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Query:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA
        MDVD KSIDRCSSRKLQ NNN+VVGTDFLETNKADRAMWLLKCPQ VTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAG DSGN LR+
Subjt:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA

Query:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSES+QGKFT EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE 
Subjt:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKP
        KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EE KP
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

4.8e-141

93.14

Show/hide

Query:  MDVDDKSIDRCSSRKLQSNNNT-VVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALR
        MDVD KSIDR +SRK Q+NNN  VVGTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA  DSGNALR
Subjt:  MDVDDKSIDRCSSRKLQSNNNT-VVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALR

Query:  AYSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        +Y+LNMSTDFIPMSVFSES+QGKFT EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  AYSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
         KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

4.5e-139

91.17

Show/hide

Query:  MDVDDKSIDRCSSRKLQSNNNT-VVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALR
        MDVD KSIDR +SRK Q+NNN  VVGTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA  DSGNALR
Subjt:  MDVDDKSIDRCSSRKLQSNNNT-VVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALR

Query:  AYSLNMSTDFIPMSVFSESTQ------GKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
        +Y+LNMSTDFIPMSVFSES+Q      GKFT EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
Subjt:  AYSLNMSTDFIPMSVFSESTQ------GKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV

Query:  VSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        VSKGSE KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  VSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

2.5e-142

93.53

Show/hide

Query:  MDVDDKSIDRCSSRKLQSNNNTV--VGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNAL
        MDVDDK IDRCSSRKLQ+NNN+V   GTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAG DSGN+L
Subjt:  MDVDDKSIDRCSSRKLQSNNNTV--VGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNAL

Query:  RAYSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        R+YSLNMSTDFIPMSVFSES  GKFT EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        E KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

A0A6J1HK34 Transcription initiation factor IIF subunit beta

2.5e-142

93.84

Show/hide

Query:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA
        MD DDK IDR SSRKL SN++T  GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA  DSG ALRA
Subjt:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA

Query:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSES QGKFT EGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

8.7e-143

94.2

Show/hide

Query:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA
        MD DDK IDR SSRKL SN++TV GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA  DSG ALRA
Subjt:  MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRA

Query:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSES QGKFT EGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

SwissProt top hits

e value

%identity

Alignment

P13984 General transcription factor IIF subunit 2

1.9e-14

31.9

Show/hide

Query:  MSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE
        ++VF+ES+  K + EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE

Query:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
         ++F  FE+  Y+  K L+  T QP  Y+KEILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

P41900 General transcription factor IIF subunit 2

1.8e-15

28.57

Show/hide

Query:  LETNKADRAMWLLKCPQAVT----RALSNSPDGPSR------PVAKVIVSVDP-LQSNDDDDSSSTEFTMELAGFDSGNALRAYSLNMSTDFIPMSVFS-
        L+ + A R +WL+K P+ +     +A +N   G  R        A+V +S+ P + + D ++   TE  ++++   +   L  +S    +D    S  S 
Subjt:  LETNKADRAMWLLKCPQAVT----RALSNSPDGPSR------PVAKVIVSVDP-LQSNDDDDSSSTEFTMELAGFDSGNALRAYSLNMSTDFIPMSVFS-

Query:  -ESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIF
         +    K   EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++  +  ++F
Subjt:  -ESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIF

Query:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
          FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK EY+    E K
Subjt:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

Q01750 General transcription factor IIF subunit 2

1.5e-14

26.98

Show/hide

Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGF-DSGNALRAYSLNMSTDFI-------PMSVFSESTQGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA   D G    + S      F+        ++VF+ES+  K
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGF-DSGNALRAYSLNMSTDFI-------PMSVFSESTQGK

Query:  FTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQP
         + EG ++ + + +P     E Y KL R +  +S    R  Q  D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

Q2T9L9 General transcription factor IIF subunit 2

1.9e-14

26.59

Show/hide

Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGF-DSGNALRAYSLNMSTDFI-------PMSVFSESTQGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA   D G    + S      F+        ++VF+ES+  K
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGF-DSGNALRAYSLNMSTDFI-------PMSVFSESTQGK

Query:  FTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQP
         + EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
        Y+  K L+  T QP  Y+K+ILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

Q8R0A0 General transcription factor IIF subunit 2

8.7e-15

31.9

Show/hide

Query:  MSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE
        ++VF+ES+  K + EG ++ + + +P     E Y KL R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE

Query:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
         ++F  FE+  Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

1.1e-65

51.95

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Query:  LETNKADRAMWLLKCPQAVTRALSN----------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRAYSLNMSTDFIPMSVFSES
        L+  K+DR++WL+KCP  V +A             S D P   +AK++  VDPL+     D S  EF M + G + GN  + Y+LNM TDF+PM  FS+ 
Subjt:  LETNKADRAMWLLKCPQAVTRALSN----------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRAYSLNMSTDFIPMSVFSES

Query:  TQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSENKRLRKERGELEKIIFR
         QG   AEGK+ +KFDMKP+ + +E Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  ++S  + EK+K    K +E KR R++RGELE I+F+
Subjt:  TQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSENKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEE
        LFE QP WT KQL+QETDQP Q++KEIL +LCVYN +G +QGTYELKPEYK++ E+
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

3.1e-76

55.64

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Query:  KLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSN--------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRAYSLNMS
        K++ N N     + LET  A+R+M L+K P  V  +L +         PD P RP AKVI+ VDPL   D+     T+F MELA  DSGN  R Y+L+MS
Subjt:  KLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSN--------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRAYSLNMS

Query:  TDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKE
         DFIPM+VF ES+ GK + EGKI NKFDM+PH++N+E YG+LCRERT+K M K+RQIQVID+  G HMRPMPGM ++   A EKKK+ ++ SE KR R++
Subjt:  TDFIPMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKE

Query:  RGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEE
        R E+E+++F LFERQ  WT + LIQETDQPEQ++K++LKDLC+YNNKG +QGTYELKPEYK+  +E
Subjt:  RGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEE

Sequences

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CDS sequence

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ATGGACGTTGACGACAAATCCATCGACCGTTGCAGTTCCAGAAAACTCCAAAGCAATAACAATACCGTCGTCGGAACCGACTTCTTGGAGACGAACAAGGCGGACAGAGC
AATGTGGCTCTTGAAATGCCCGCAAGCCGTAACTCGCGCCCTTTCCAATTCGCCGGATGGACCTTCTCGTCCGGTCGCTAAGGTCATTGTTTCTGTCGACCCTCTGCAAT
CGAATGACGATGATGATTCTTCATCAACTGAGTTCACTATGGAATTGGCTGGCTTTGACTCTGGAAATGCATTAAGGGCCTACTCGTTGAATATGTCCACAGACTTCATT
CCGATGTCTGTATTTTCTGAGTCAACACAAGGAAAGTTTACTGCCGAAGGAAAAATATTGAACAAATTTGACATGAAGCCGCATGATCAAAATCTTGAGAGGTACGGGAA
ACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAGAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTGTTGT
CATTTGGAGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGGAAAATAAGAGGCTGAGGAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTCTTTGAAAGA
CAACCATATTGGACGTCTAAACAACTGATTCAAGAGACCGACCAACCTGAACAATATATGAAAGAAATCCTTAAAGACCTTTGTGTCTACAACAACAAGGGTGTTCACCA
AGGAACGTATGAGCTGAAGCCAGAATACAAGGAAACATGTGAGGAAACGAAACCGCGATAG

mRNA sequence

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TTTCTAACAAAAACCGTTTGTTTCATTTCTTTTCAATTTTCCCACCTCCATTTCCATAGACGTACCATTGCTTTCCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTCT
CTCTGCAATGGACGTTGACGACAAATCCATCGACCGTTGCAGTTCCAGAAAACTCCAAAGCAATAACAATACCGTCGTCGGAACCGACTTCTTGGAGACGAACAAGGCGG
ACAGAGCAATGTGGCTCTTGAAATGCCCGCAAGCCGTAACTCGCGCCCTTTCCAATTCGCCGGATGGACCTTCTCGTCCGGTCGCTAAGGTCATTGTTTCTGTCGACCCT
CTGCAATCGAATGACGATGATGATTCTTCATCAACTGAGTTCACTATGGAATTGGCTGGCTTTGACTCTGGAAATGCATTAAGGGCCTACTCGTTGAATATGTCCACAGA
CTTCATTCCGATGTCTGTATTTTCTGAGTCAACACAAGGAAAGTTTACTGCCGAAGGAAAAATATTGAACAAATTTGACATGAAGCCGCATGATCAAAATCTTGAGAGGT
ACGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAGAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGAC
GTGTTGTCATTTGGAGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGGAAAATAAGAGGCTGAGGAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTCTT
TGAAAGACAACCATATTGGACGTCTAAACAACTGATTCAAGAGACCGACCAACCTGAACAATATATGAAAGAAATCCTTAAAGACCTTTGTGTCTACAACAACAAGGGTG
TTCACCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAAACATGTGAGGAAACGAAACCGCGATAGGTCGGTTTGGAGAACTGGGAAACCATTTAGTGCAAGATTTGT
GTGTGGAGGGAGG

Protein sequence

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MDVDDKSIDRCSSRKLQSNNNTVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGFDSGNALRAYSLNMSTDFI
PMSVFSESTQGKFTAEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFER
QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

Tan0020833 (gene) of Snake gourd v1 genome