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Tan0021012 (gene) of Snake gourd v1 genome

Gene IDTan0021012
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG01:66344133..66348595
RNA-Seq ExpressionTan0021012
SyntenyTan0021012
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]3.2e-0973.81Show/hide
Query:  VHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        V+TG++ L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  VHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0747.13Show/hide
Query:  IRVVSDILVVLICRVRI---RSSNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +R+    L + +  VRI    +   PR NR S++ + + +       T    LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  IRVVSDILVVLICRVRI---RSSNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]5.1e-0755.38Show/hide
Query:  SNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        S + R NR S++   L +       T    LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  SNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0747.13Show/hide
Query:  IRVVSDILVVLICRVRI---RSSNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +R+    L + +  VRI    +   PR NR S++ + + +       T    LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  IRVVSDILVVLICRVRI---RSSNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]1.9e-0649.37Show/hide
Query:  SNRPRANRSSVR-------------AKVLPEALWYRVHTGFIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        S + R NR S++              ++L  +L+  V T  I  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  SNRPRANRSSVR-------------AKVLPEALWYRVHTGFIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein1.6e-0973.81Show/hide
Query:  VHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        V+TG++ L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  VHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7T7M6 Reverse transcriptase6.5e-0847.13Show/hide
Query:  IRVVSDILVVLICRVRI---RSSNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +R+    L + +  VRI    +   PR NR S++ + + +       T    LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  IRVVSDILVVLICRVRI---RSSNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7TDY3 Uncharacterized protein2.5e-0755.38Show/hide
Query:  SNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        S + R NR S++   L +       T    LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  SNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5D3BTP3 Reverse transcriptase6.5e-0847.13Show/hide
Query:  IRVVSDILVVLICRVRI---RSSNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +R+    L + +  VRI    +   PR NR S++ + + +       T    LSTLSVL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  IRVVSDILVVLICRVRI---RSSNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

A0A5D3DUS7 Uncharacterized protein9.4e-0749.37Show/hide
Query:  SNRPRANRSSVR-------------AKVLPEALWYRVHTGFIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        S + R NR S++              ++L  +L+  V T  I  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  SNRPRANRSSVR-------------AKVLPEALWYRVHTGFIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTATCAGTGGACACAATAATATCTACAGTGAGGAAAGTGCAGCTACAATTTATACATGAGCATATACGATGGGAGTCTTTGGGGGCCCCACTACATCGTAGAAT
AAACGTTGACAGAATTTGTTGTCAAATCCGAGTAGTCTCTGATATTTTGGTTGTATTGATCTGTAGAGTTAGAATCAGAAGCTCTAATAGGCCAAGAGCAAATAGGTCGA
GTGTACGGGCCAAGGTTCTACCCGAGGCTTTATGGTACCGTGTGCACACAGGTTTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCT
GGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTTATCAGTGGACACAATAATATCTACAGTGAGGAAAGTGCAGCTACAATTTATACATGAGCATATACGATGGGAGTCTTTGGGGGCCCCACTACATCGTAGAAT
AAACGTTGACAGAATTTGTTGTCAAATCCGAGTAGTCTCTGATATTTTGGTTGTATTGATCTGTAGAGTTAGAATCAGAAGCTCTAATAGGCCAAGAGCAAATAGGTCGA
GTGTACGGGCCAAGGTTCTACCCGAGGCTTTATGGTACCGTGTGCACACAGGTTTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCT
GGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MTLSVDTIISTVRKVQLQFIHEHIRWESLGAPLHRRINVDRICCQIRVVSDILVVLICRVRIRSSNRPRANRSSVRAKVLPEALWYRVHTGFILLSTLSVLRDNSAVVSA
GRAPLRQRRWECWAGPTTS