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Tan0021046 (gene) of Snake gourd v1 genome

Gene IDTan0021046
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:8932501..8933581
RNA-Seq ExpressionTan0021046
SyntenyTan0021046
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]7.7e-0959.32Show/hide
Query:  VRVKTLTEALWYR----VHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWTGPTTS
        + +  +TE L  R    V+TG + L TL+VLRDN A+VSAGR PLRQRQWECW  PTTS
Subjt:  VRVKTLTEALWYR----VHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWTGPTTS

KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-0655.88Show/hide
Query:  SVYLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVV
        S  +E EA LG VGKLI++PTTFMK LPR  R S++ + L +       T + LLSTLSVLRDN AVV
Subjt:  SVYLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVV

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-0742.86Show/hide
Query:  FAVKSGKPLMFWLFCSV-YLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWT
        + + SG+  M WL  S  +L+L  L   +  L         ++PR  R S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQR+WEC T
Subjt:  FAVKSGKPLMFWLFCSV-YLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWT

Query:  GPTTS
        GPTTS
Subjt:  GPTTS

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]8.3e-1156.1Show/hide
Query:  SVYLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWEC
        S  +E EAL  MVGKLI++PTT MK LPR  R S++   L +       T +  LSTLSVL DN  VVSAGRA LRQR+WEC
Subjt:  SVYLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWEC

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-0742.86Show/hide
Query:  FAVKSGKPLMFWLFCSV-YLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWT
        + + SG+  M WL  S  +L+L  L   +  L         ++PR  R S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQR+WEC T
Subjt:  FAVKSGKPLMFWLFCSV-YLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWT

Query:  GPTTS
        GPTTS
Subjt:  GPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein3.8e-0959.32Show/hide
Query:  VRVKTLTEALWYR----VHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWTGPTTS
        + +  +TE L  R    V+TG + L TL+VLRDN A+VSAGR PLRQRQWECW  PTTS
Subjt:  VRVKTLTEALWYR----VHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWTGPTTS

A0A5A7T7M6 Reverse transcriptase1.6e-0742.86Show/hide
Query:  FAVKSGKPLMFWLFCSV-YLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWT
        + + SG+  M WL  S  +L+L  L   +  L         ++PR  R S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQR+WEC T
Subjt:  FAVKSGKPLMFWLFCSV-YLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWT

Query:  GPTTS
        GPTTS
Subjt:  GPTTS

A0A5A7TPS6 Retrotrans_gag domain-containing protein4.0e-1156.1Show/hide
Query:  SVYLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWEC
        S  +E EAL  MVGKLI++PTT MK LPR  R S++   L +       T +  LSTLSVL DN  VVSAGRA LRQR+WEC
Subjt:  SVYLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWEC

A0A5D3BTP3 Reverse transcriptase1.6e-0742.86Show/hide
Query:  FAVKSGKPLMFWLFCSV-YLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWT
        + + SG+  M WL  S  +L+L  L   +  L         ++PR  R S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQR+WEC T
Subjt:  FAVKSGKPLMFWLFCSV-YLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWT

Query:  GPTTS
        GPTTS
Subjt:  GPTTS

A0A5D3BV68 Reverse transcriptase6.0e-0755.88Show/hide
Query:  SVYLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVV
        S  +E EA LG VGKLI++PTTFMK LPR  R S++ + L +       T + LLSTLSVLRDN AVV
Subjt:  SVYLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGATTTTGCTGTCAAATCCGGGAAGCCTCTGATGTTTTGGTTGTTCTGCTCTGTATACTTGGAGTTAGAAGCTCTATTAGGTATGGTTGGAAAGCTTATTGAATT
TCCGACAACTTTCATGAAGAAATTGCCAAGAACAAAAAGGTCGAGTGTACGGGTCAAGACTCTAACCGAGGCTTTATGGTACCGTGTGCACACAGGTCTTATTCTGTTGT
CGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACAATGGGAGTGCTGGACGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGATTTTGCTGTCAAATCCGGGAAGCCTCTGATGTTTTGGTTGTTCTGCTCTGTATACTTGGAGTTAGAAGCTCTATTAGGTATGGTTGGAAAGCTTATTGAATT
TCCGACAACTTTCATGAAGAAATTGCCAAGAACAAAAAGGTCGAGTGTACGGGTCAAGACTCTAACCGAGGCTTTATGGTACCGTGTGCACACAGGTCTTATTCTGTTGT
CGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACAATGGGAGTGCTGGACGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MTDFAVKSGKPLMFWLFCSVYLELEALLGMVGKLIEFPTTFMKKLPRTKRSSVRVKTLTEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRQWECWTGPTTS