; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0021052 (gene) of Snake gourd v1 genome

Gene IDTan0021052
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGypsy-like retrotransposase
Genome locationLG03:64965728..64968685
RNA-Seq ExpressionTan0021052
SyntenyTan0021052
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051585.1 uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]3.4e-3959.87Show/hide
Query:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR
        KE  + +       S+ STN+AK  +  +EK+SN P+L Y+PLSRRKKGESPF E  + LK G++E+LKESF TPLT ITKQEI   K+D  + +LP+RR
Subjt:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR

Query:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK
        TKD FDPKAYKL++ AGYDFTTHT FKSLKI+ E+P+LSSTQKKLL++ ++ P SRK
Subjt:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK

KAA0060429.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]1.2e-3665.89Show/hide
Query:  EEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKS
        +EK+SNLP+LCY+PLSRRKKGESPF E  + LK GD+E+LKESF TPLT ITKQEI   K+D  K +L ++RTKD FDPKAYKL++  GYDFTTH  FKS
Subjt:  EEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKS

Query:  LKIFDERPELSSTQKKLLKKCYMTPTSRK
        LKI  ++P+LSSTQKKLL++ +  P SRK
Subjt:  LKIFDERPELSSTQKKLLKKCYMTPTSRK

KAA0062018.1 uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa]2.8e-4161.15Show/hide
Query:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR
        KE  + +     + S+ ST++AK  +  +EK+SN P+LCY+PLSRRKKGESPF E S+ LK GD+E+LKESF TPLT ITKQEI   K+D  + +LP+RR
Subjt:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR

Query:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK
        TKDEFDPKAYKL++ AGYDFTTHT FKSLKI  E+P++SSTQKKLL++ +  P SRK
Subjt:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-3859.87Show/hide
Query:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR
        KE    +     + S+ ST++AK  +  +EK+SN  +L Y+PLSRRKKGESPF E  + LK GD+E+LKESF TPLT ITKQEI   K+D  + +LP+RR
Subjt:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR

Query:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK
        TKDEFDPKAYKL++ AGYDFTTHT FKSLKI  E+P+LSSTQKKLL++ +  P SRK
Subjt:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-0445.24Show/hide
Query:  YEPVKIWLQREF-PNTSYGQLKHTENEDEGWTLVTRRKKQKQRCIQRESHTFRNYKRKNVPRKKNKKIKSWRKCKLVKEENEDF
        +EPV +   +E  P  S  + +  E +DE WT+VTRRKK+K   IQ+E   +RNY+R N   +KNKK K  RK KL+ +E++DF
Subjt:  YEPVKIWLQREF-PNTSYGQLKHTENEDEGWTLVTRRKKQKQRCIQRESHTFRNYKRKNVPRKKNKKIKSWRKCKLVKEENEDF

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.0e-3862.94Show/hide
Query:  SKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLS
        S+ ST++AK  +  +EK+SN P+L Y+PLSRRKKGESPF E S+ LK GD+E+L+ESF TPLT ITKQE   +K D  + +LP+RRTKD FDPKAYKL++
Subjt:  SKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLS

Query:  NAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK
         AGYDFTTH  FKSLKI  E+P+LSSTQKKLL++ ++ P SRK
Subjt:  NAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK

TrEMBL top hitse value%identityAlignment
A0A5A7UD46 Uncharacterized protein1.7e-3959.87Show/hide
Query:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR
        KE  + +       S+ STN+AK  +  +EK+SN P+L Y+PLSRRKKGESPF E  + LK G++E+LKESF TPLT ITKQEI   K+D  + +LP+RR
Subjt:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR

Query:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK
        TKD FDPKAYKL++ AGYDFTTHT FKSLKI+ E+P+LSSTQKKLL++ ++ P SRK
Subjt:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK

A0A5A7V356 Uncharacterized protein1.4e-4161.15Show/hide
Query:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR
        KE  + +     + S+ ST++AK  +  +EK+SN P+LCY+PLSRRKKGESPF E S+ LK GD+E+LKESF TPLT ITKQEI   K+D  + +LP+RR
Subjt:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR

Query:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK
        TKDEFDPKAYKL++ AGYDFTTHT FKSLKI  E+P++SSTQKKLL++ +  P SRK
Subjt:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK

A0A5A7V3U8 Gypsy-like retrotransposase5.9e-3765.89Show/hide
Query:  EEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKS
        +EK+SNLP+LCY+PLSRRKKGESPF E  + LK GD+E+LKESF TPLT ITKQEI   K+D  K +L ++RTKD FDPKAYKL++  GYDFTTH  FKS
Subjt:  EEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKS

Query:  LKIFDERPELSSTQKKLLKKCYMTPTSRK
        LKI  ++P+LSSTQKKLL++ +  P SRK
Subjt:  LKIFDERPELSSTQKKLLKKCYMTPTSRK

A0A5D3C0W6 Ty3-gypsy retrotransposon protein1.4e-3859.87Show/hide
Query:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR
        KE    +     + S+ ST++AK  +  +EK+SN  +L Y+PLSRRKKGESPF E  + LK GD+E+LKESF TPLT ITKQEI   K+D  + +LP+RR
Subjt:  KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERR

Query:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK
        TKDEFDPKAYKL++ AGYDFTTHT FKSLKI  E+P+LSSTQKKLL++ +  P SRK
Subjt:  TKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK

A0A5D3C0W6 Ty3-gypsy retrotransposon protein6.0e-0545.24Show/hide
Query:  YEPVKIWLQREF-PNTSYGQLKHTENEDEGWTLVTRRKKQKQRCIQRESHTFRNYKRKNVPRKKNKKIKSWRKCKLVKEENEDF
        +EPV +   +E  P  S  + +  E +DE WT+VTRRKK+K   IQ+E   +RNY+R N   +KNKK K  RK KL+ +E++DF
Subjt:  YEPVKIWLQREF-PNTSYGQLKHTENEDEGWTLVTRRKKQKQRCIQRESHTFRNYKRKNVPRKKNKKIKSWRKCKLVKEENEDF

A0A5D3C0W6 Ty3-gypsy retrotransposon protein2.4e-3862.94Show/hide
Query:  SKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLS
        S+ ST++AK  +  +EK+SN P+L Y+PLSRRKKGESPF E S+ LK GD+E+L+ESF TPLT ITKQE   +K D  + +LP+RRTKD FDPKAYKL++
Subjt:  SKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLS

Query:  NAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK
         AGYDFTTH  FKSLKI  E+P+LSSTQKKLL++ ++ P SRK
Subjt:  NAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACATTAGTGAGGAAAGAATGGTTGAATTTGTAAAGAAGATCAACATGTTATTGAAGTCAATTGAAGAAAGAGATTATGAAATCACTTCTCTCAAGAATCAAAT
TGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCCTGCTGTCAGAAATAAGGGAAAGACCTCTATACAAGAAGTTCATACACAACATTCCACTTCAATTGCTTCATTGT
CTGTCCAACAACTCCAGGATATGATTACAAACTCCATCAGAGCACAATATGAGCCTGTGAAAATTTGGTTGCAGCGAGAATTTCCAAATACCTCCTATGGTCAGCTTAAG
CATACTGAAAATGAAGATGAAGGATGGACTTTAGTAACGCGTCGAAAGAAGCAAAAACAACGATGCATCCAGAGAGAATCACACACGTTTCGAAACTACAAGAGGAAAAA
TGTGCCACGAAAGAAGAACAAAAAGATCAAAAGTTGGAGGAAATGCAAGCTAGTTAAGGAAGAGAACGAAGACTTTCACATAAAGAAAGAGTCGATTGAAGAGGTAGACG
CTTGTGAAGTTAAAACAAGTAAGCCATCTACCAACTCTGCAAAGGAAAAGGTTTCAAATGAAGAAAAATCATCAAATCTTCCAGTATTGTGTTACATCCCTTTATCACGA
CGTAAAAAGGGAGAATCGCCATTTACAGAATGCTCAGAAAACTTGAAATCTGGTGATGTGGAAATCCTAAAAGAAAGTTTCATCACACCTCTAACAGTAATCACCAAGCA
AGAAATTCGGAATTCGAAAGTTGATAATGCAAAAATGGCCTTGCCTGAAAGAAGAACGAAGGATGAGTTTGATCCTAAAGCATACAAACTCCTATCAAATGCAGGTTACG
ACTTCACAACTCACACTACGTTCAAAAGTTTAAAAATTTTCGATGAGAGGCCTGAGCTTTCTTCAACACAAAAGAAACTTTTAAAGAAATGTTATATGACACCCACGTCA
AGAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGACATTAGTGAGGAAAGAATGGTTGAATTTGTAAAGAAGATCAACATGTTATTGAAGTCAATTGAAGAAAGAGATTATGAAATCACTTCTCTCAAGAATCAAAT
TGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCCTGCTGTCAGAAATAAGGGAAAGACCTCTATACAAGAAGTTCATACACAACATTCCACTTCAATTGCTTCATTGT
CTGTCCAACAACTCCAGGATATGATTACAAACTCCATCAGAGCACAATATGAGCCTGTGAAAATTTGGTTGCAGCGAGAATTTCCAAATACCTCCTATGGTCAGCTTAAG
CATACTGAAAATGAAGATGAAGGATGGACTTTAGTAACGCGTCGAAAGAAGCAAAAACAACGATGCATCCAGAGAGAATCACACACGTTTCGAAACTACAAGAGGAAAAA
TGTGCCACGAAAGAAGAACAAAAAGATCAAAAGTTGGAGGAAATGCAAGCTAGTTAAGGAAGAGAACGAAGACTTTCACATAAAGAAAGAGTCGATTGAAGAGGTAGACG
CTTGTGAAGTTAAAACAAGTAAGCCATCTACCAACTCTGCAAAGGAAAAGGTTTCAAATGAAGAAAAATCATCAAATCTTCCAGTATTGTGTTACATCCCTTTATCACGA
CGTAAAAAGGGAGAATCGCCATTTACAGAATGCTCAGAAAACTTGAAATCTGGTGATGTGGAAATCCTAAAAGAAAGTTTCATCACACCTCTAACAGTAATCACCAAGCA
AGAAATTCGGAATTCGAAAGTTGATAATGCAAAAATGGCCTTGCCTGAAAGAAGAACGAAGGATGAGTTTGATCCTAAAGCATACAAACTCCTATCAAATGCAGGTTACG
ACTTCACAACTCACACTACGTTCAAAAGTTTAAAAATTTTCGATGAGAGGCCTGAGCTTTCTTCAACACAAAAGAAACTTTTAAAGAAATGTTATATGACACCCACGTCA
AGAAAATGA
Protein sequenceShow/hide protein sequence
MADISEERMVEFVKKINMLLKSIEERDYEITSLKNQIESRDAAESSQTPAVRNKGKTSIQEVHTQHSTSIASLSVQQLQDMITNSIRAQYEPVKIWLQREFPNTSYGQLK
HTENEDEGWTLVTRRKKQKQRCIQRESHTFRNYKRKNVPRKKNKKIKSWRKCKLVKEENEDFHIKKESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSR
RKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTS
RK