CuGenDBv2

Gene ID	Tan0021089
Organism	Trichosanthes anguina (Snake gourd v1)
Description	coiled-coil domain-containing protein 12-like
Genome location	LG05:71905596..71909750
RNA-Seq Expression	Tan0021089
Synteny	Tan0021089
Gene Ontology terms	GO:0005684 - U2-type spliceosomal complex (cellular component) GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572999.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-70

94.16

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA  DTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

XP_022155130.1 coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia]

1.5e-69

92.86

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDSVEQVAAARKERLRALRAAQELLN PDEKTSGGEDK+NG   DTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQ+KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK++AEGDD QNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

XP_022955111.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]

1.7e-70

94.16

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA  DTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

XP_022994277.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima]

4.6e-71

94.16

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDSVEQVAAAR+ERLRALR AQELLNAPDEKTSGGED+ENG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

1.2e-71

95.45

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGEDKENGA  DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3ATB1 coiled-coil domain-containing protein 12

1.1e-67

92.16

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDS EQVAAARKERL+ALRAAQELLNA DEK S GEDKENGAT DT+ETNL+MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ AEGDDDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTE

A0A5D3BJ95 Coiled-coil domain-containing protein 12

1.1e-67

92.16

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDS EQVAAARKERL+ALRAAQELLNA DEK S GEDKENGAT DT+ETNL+MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ AEGDDDQNG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTE

A0A6J1DLK0 coiled-coil domain-containing protein 12 isoform X1

7.2e-70

92.86

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDSVEQVAAARKERLRALRAAQELLN PDEKTSGGEDK+NG   DTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQ+KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK++AEGDD QNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

A0A6J1GST8 coiled-coil domain-containing protein 12-like

8.5e-71

94.16

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA  DTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

2.2e-71

94.16

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN
        MATEEDSVEQVAAAR+ERLRALR AQELLNAPDEKTSGGED+ENG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

SwissProt top hits

e value

%identity

Alignment

Q8R344 Coiled-coil domain-containing protein 12

3.8e-12

38.93

Show/hide

Query:  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEE---------TNLSMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQ
        +E+ A  RKERL+ALR          EKT G +D+E+G  P T++          +  ++ RNYVP D++L+  ++  A PV      K +   A   P 
Subjt:  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEE---------TNLSMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQ

Query:  IKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ
        I+E    N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++
Subjt:  IKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ

Q8WUD4 Coiled-coil domain-containing protein 12

2.3e-12

39.6

Show/hide

Query:  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTE---------ETNLSMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQ
        +E+ A  RKERL+ALR          EKT G +DKE+G  P T+         E +  ++ RNYVP D++L++ ++  A PV      K +   A   P 
Subjt:  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTE---------ETNLSMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQ

Query:  IKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ
        I+E    N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++
Subjt:  IKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

6.0e-45

67.57

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQI--KEDPF
        MA+E++S+EQ AAARKE L+ALRAAQEL           E KE+G     EE   +MKFRNYVP  KELQ+GKLAPP LPKFEDP+   PP +  KEDPF
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQI--KEDPF

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGD
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLMEEQEK+++ AE D
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAGACTTC
TGGAGGAGAGGATAAAGAGAATGGTGCTACTCCAGATACCGAAGAAACTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGTAAGC
TTGCCCCACCTGTATTGCCGAAGTTTGAGGACCCCGTTGCTACGGAACCTCCACAAATAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTC
AGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGTACTCAGAAAGCATTATATAAGCTAATGGAGGAACAGGAAAAGCAAAAGCAGACAGCTGAAGGAGACGA
TGACCAAAATGGTACAGAGGGATAG

mRNA sequence

Show/hide mRNA sequence

GTTATTCCTGTCGAGTTTTTCCTCTCAAGTACAATTGCGTCTCTTGCTTTTTCCTCCTCTTTGTGTTGCTTCTACGGCTGTCTATCTGTCTATTCTTCTTTCGCTTCCTT
TTGATGAATTTTTGTCATCTTCGGCTATCTCGGAGATATTTTACGTACCAGTAGATAATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAG
ATTGAGAGCTCTAAGAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTCCAGATACCGAAGAAACTAATC
TTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTTGAGGACCCCGTTGCTACGGAACCTCCA
CAAATAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGTACTCAGAAAGC
ATTATATAAGCTAATGGAGGAACAGGAAAAGCAAAAGCAGACAGCTGAAGGAGACGATGACCAAAATGGTACAGAGGGATAGAAAGCCACAAGTTATGAGCTCTAAATAT
TAGAGTAGTAACATTCCCGAATACTCCGACATTGAGAAATTTGTCACTGAAGAAAAATGGGCGTTGCTGGCTCCTAGTGTCAGTTTTTCTGTGACCTTTCTGATCATTCT
TGGCTGCAAATCTTTAGTTTGTCTATTGTGGCTTATGGTGCCCCCTTACTAATTACGCTCCATAGTGTTATATCTCATACTGGATAGATTTGTAATTTACCTATACTACC
TTAAAATAACTTTTTTCCTTTTGAAACTGCAA

Protein sequence

Show/hide protein sequence

MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDL
RRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

Tan0021089 (gene) of Snake gourd v1 genome