CuGenDBv2

Gene ID	Tan0021098
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Cytochrome b559 subunit alpha
Genome location	Contig00124:150978..151750
RNA-Seq Expression	Tan0021098
Synteny	Tan0021098
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0009539 - photosystem II reaction center (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002682 - Photosystem II PsbJ IPR006216 - Photosystem II cytochrome b559, conserved site IPR006217 - Photosystem II cytochrome b559, alpha subunit IPR013081 - Photosystem II cytochrome b559, N-terminal IPR013082 - Photosystem II cytochrome b559, alpha subunit, lumenal region IPR037025 - Photosystem II cytochrome b559, alpha subunit superfamily IPR037267 - Photosystem II PsbJ superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4396260.1 hypothetical protein F8388_019806 [Cannabis sativa]

2.3e-36

66.67

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR-------------------------------
        M GS GERSFADIITSIRYWVIHSITIPSLFI GWLFVSTGLAYDVFGSPRPNEYFTESRQG+PLITGR                               
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR-------------------------------

Query:  ------TVTGIPVIGLIGIFFYGSYSGLGSSL
              TV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  ------TVTGIPVIGLIGIFFYGSYSGLGSSL

QYA18126.1 photosystem II cytochrome b559 subunit alpha [Urtica angustifolia]

4.9e-31

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

YP_009417545.1 photosystem II cytochrome b559 alpha subunit [Erythronium sibiricum]

4.9e-31

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

YP_009427831.1 photosystem II protein V [Circaeaster agrestis]

4.9e-31

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

YP_009574933.1 cytochrome b559 subunit alpha [Aristolochia macrophylla]

4.9e-31

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

TrEMBL top hits

e value

%identity

Alignment

A0A076EEJ0 Cytochrome b559 subunit alpha

2.4e-31

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

A0A0F6PYZ2 Cytochrome b559 subunit alpha

2.4e-31

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

A0A343UJT0 Cytochrome b559 subunit alpha

2.4e-31

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

A0A7J6HPK4 Cytochrome b559 subunit alpha

1.1e-36

66.67

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR-------------------------------
        M GS GERSFADIITSIRYWVIHSITIPSLFI GWLFVSTGLAYDVFGSPRPNEYFTESRQG+PLITGR                               
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR-------------------------------

Query:  ------TVTGIPVIGLIGIFFYGSYSGLGSSL
              TV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  ------TVTGIPVIGLIGIFFYGSYSGLGSSL

F1KLD9 Cytochrome b559 subunit alpha

2.4e-31

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

SwissProt top hits

e value

%identity

Alignment

P56779 Cytochrome b559 subunit alpha

6.4e-34

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

P59702 Cytochrome b559 subunit alpha

6.4e-34

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

P69382 Cytochrome b559 subunit alpha

6.4e-34

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

Q3V518 Cytochrome b559 subunit alpha

6.4e-34

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

Q70XY9 Cytochrome b559 subunit alpha

6.4e-34

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00550.1 photosystem II reaction center protein J

1.2e-06

81.82

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Query:  IPLITGRTVTGIPVIGLIGIFFYGSYSGLGSSL
        IPL    TV GI VIGLIGIFFYGSYSGLGSSL
Subjt:  IPLITGRTVTGIPVIGLIGIFFYGSYSGLGSSL

ATCG00580.1 photosystem II reaction center protein E

4.6e-35

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGR

Sequences

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CDS sequence

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ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATT
CGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTACTGTAACTGGTA
TTCCTGTGATCGGTTTAATCGGTATTTTCTTTTATGGTTCATATTCTGGATTAGGTTCATCTCTGTAA

mRNA sequence

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Protein sequence

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MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRTVTGIPVIGLIGIFFYGSYSGLGSSL

Tan0021098 (gene) of Snake gourd v1 genome