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Tan0021115 (gene) of Snake gourd v1 genome

Gene IDTan0021115
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG03:77894703..77894882
RNA-Seq ExpressionTan0021115
SyntenyTan0021115
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF40912.1 conserved hypothetical protein [Ricinus communis]3.4e-0656.14Show/hide
Query:  MNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSS-----SQKHFS
        M  ++ +++ RR  GR IPKRGQVK+GI+VG+AH+V SIFSHSHSS     +  HFS
Subjt:  MNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSS-----SQKHFS
ESR62489.1 hypothetical protein CICLE_v10017421mg [Citrus clementina]2.2e-0558.62Show/hide
Query:  INGQRLGRRT-----PGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHS----SSQKHFS
        ING  + RR       GR IPKRGQVKM I+VG+AH+V SIFSHSHS    S+  HFS
Subjt:  INGQRLGRRT-----PGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHS----SSQKHFS
KAA0052717.1 hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa]1.1e-1785.96Show/hide
Query:  MGEEAKMMNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSSSQKH
        MGEEAKMMNNINGQRLGRR  GRLIPKRGQVKMGIMVG+A TVTSIFS+SHS+ Q+H
Subjt:  MGEEAKMMNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSSSQKH
KAG7026593.1 Anaphase-promoting complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-1074Show/hide
Query:  MNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSSSQKH
        MNNING+R+ RR  GR IPKRGQVKMGIMVGI HTVTSIFSH H     H
Subjt:  MNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSSSQKH
KDO75789.1 hypothetical protein CISIN_1g041404mg [Citrus sinensis]2.2e-0556.9Show/hide
Query:  INGQRLGRRT-----PGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHS----SSQKHFS
        ING  + +R       GRLIPKRGQVK+ I+VG+AH+V SIFSHSHS    S+  HFS
Subjt:  INGQRLGRRT-----PGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHS----SSQKHFS
TrEMBL top hitse value%identityAlignment
A0A067G885 Uncharacterized protein1.1e-0556.9Show/hide
Query:  INGQRLGRRT-----PGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHS----SSQKHFS
        ING  + +R       GRLIPKRGQVK+ I+VG+AH+V SIFSHSHS    S+  HFS
Subjt:  INGQRLGRRT-----PGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHS----SSQKHFS
A0A0A0KLE0 Uncharacterized protein8.1e-0669.05Show/hide
Query:  MNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSH
        +N IN   L R+   RLIPKRGQVK+GI+VGIAH+VTSIFSH
Subjt:  MNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSH
A0A5A7UDZ4 Uncharacterized protein5.4e-1885.96Show/hide
Query:  MGEEAKMMNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSSSQKH
        MGEEAKMMNNINGQRLGRR  GRLIPKRGQVKMGIMVG+A TVTSIFS+SHS+ Q+H
Subjt:  MGEEAKMMNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSSSQKH
B9S603 Uncharacterized protein1.6e-0656.14Show/hide
Query:  MNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSS-----SQKHFS
        M  ++ +++ RR  GR IPKRGQVK+GI+VG+AH+V SIFSHSHSS     +  HFS
Subjt:  MNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSS-----SQKHFS
V4W8E8 Uncharacterized protein1.1e-0558.62Show/hide
Query:  INGQRLGRRT-----PGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHS----SSQKHFS
        ING  + RR       GR IPKRGQVKM I+VG+AH+V SIFSHSHS    S+  HFS
Subjt:  INGQRLGRRT-----PGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHS----SSQKHFS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAAGAAGCCAAGATGATGAACAACATCAACGGTCAGAGATTAGGCAGGAGGACTCCTGGCCGTCTGATCCCGAAGAGAGGCCAAGTGAAGATGGGAATCATGGT
GGGGATTGCCCATACAGTCACCTCCATCTTCTCTCACAGTCACAGTAGCAGCCAGAAACATTTCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAAGAAGCCAAGATGATGAACAACATCAACGGTCAGAGATTAGGCAGGAGGACTCCTGGCCGTCTGATCCCGAAGAGAGGCCAAGTGAAGATGGGAATCATGGT
GGGGATTGCCCATACAGTCACCTCCATCTTCTCTCACAGTCACAGTAGCAGCCAGAAACATTTCTCTTGA
Protein sequenceShow/hide protein sequence
MGEEAKMMNNINGQRLGRRTPGRLIPKRGQVKMGIMVGIAHTVTSIFSHSHSSSQKHFS