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Tan0021143 (gene) of Snake gourd v1 genome

Gene IDTan0021143
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 23-like
Genome locationLG06:4316340..4316631
RNA-Seq ExpressionTan0021143
SyntenyTan0021143
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-1177.19Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAY
        MEMKK  CAALFAA  VTA +AS+ESL+P AAPGPSSAASAALPALGSLVGAS +++
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAY
XP_022960230.1 arabinogalactan peptide 23-like [Cucurbita moschata]1.0e-1075.44Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAY
        MEMKK  CAALFAA  +TA +AS+ESL+P AAPGPSSAASAALPALGSLVGAS +++
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAY
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]2.7e-1174.6Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAYFLS
        MEMKK  CAALFAA  VTA +AS+ESL+P AAPGPSSAASAALPALGSLVGA   SF+AY+ +
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAYFLS
XP_023528634.1 arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]4.6e-1174.6Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAYFLS
        MEMK   CAALFAA AVTA +AS+ESL+P AAPGPSSAASAALPALGSL+GA   SF+AY L+
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAYFLS
XP_038899473.1 arabinogalactan protein 23-like [Benincasa hispida]2.1e-1174.6Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGAS---FIAYFLS
        MEMKK  CAALFAA AV++ +A++ESL+P AAPGPSSAASAALPALGSLVGAS   F+AYFL+
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGAS---FIAYFLS
TrEMBL top hitse value%identityAlignment
A0A1S3CDX5 arabinogalactan peptide 23-like1.4e-0866.67Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYFLS
        MEMKK  CAALFAA AV+A +A++ES++P AAPGPSSAASAALP LG+ V +   AYFL+
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYFLS
A0A6J1F3F5 arabinogalactan peptide 23-like1.5e-1076.79Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIA
        MEMKK  CAALFAA  VTA +AS+ESL+P AAPGPSSAASA LPALGSLVGAS ++
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIA
A0A6J1H8I1 arabinogalactan peptide 23-like5.0e-1175.44Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAY
        MEMKK  CAALFAA  +TA +AS+ESL+P AAPGPSSAASAALPALGSLVGAS +++
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAY
A0A6J1IYE9 arabinogalactan peptide 23-like1.2e-0969.84Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAYFLS
        MEMK   C ALF A AVTA +AS+ES +P AAPGPSSAASAALPALGSL+GA   SF+AY L+
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAYFLS
A0A6J1KX42 arabinogalactan peptide 23-like1.3e-1174.6Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAYFLS
        MEMKK  CAALFAA  VTA +AS+ESL+P AAPGPSSAASAALPALGSLVGA   SF+AY+ +
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGA---SFIAYFLS
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 237.7e-0963.79Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYF
        MEMKK  C  LFAA ++TA +A+ E   P  APGP+SAASAALPALGSLVGAS ++ F
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYF
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)1.4e-0552.54Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGP-SSAASAALPALGSLVGASFIAYF
        MEMKK  C  +FAA ++TA +A+        APGP +S AS A+PALGSLVGAS ++ F
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGP-SSAASAALPALGSLVGASFIAYF
AT3G57690.1 arabinogalactan protein 235.5e-1063.79Show/hide
Query:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYF
        MEMKK  C  LFAA ++TA +A+ E   P  APGP+SAASAALPALGSLVGAS ++ F
Subjt:  MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTTGTCTGCGCCGCTCTCTTTGCTGCCGTTGCCGTCACCGCAACCTTGGCCTCCAATGAGTCTCTCACTCCCACCGCCGCGCCGGGCCCGAGCAG
CGCTGCCTCCGCCGCTCTTCCTGCCCTTGGATCGTTGGTTGGCGCCTCATTTATCGCCTACTTCTTGAGCTGA
mRNA sequenceShow/hide mRNA sequence
CAAAGACTTTCTTCGGTTTGATCTCTCACATCTCAATTCCGAGTGAGTTTGATTTGAGTTTTCAACCGAAGTAAGGCAATTTTAATTTTATCATCCACCATGGAAATGAA
GAAGTTTGTCTGCGCCGCTCTCTTTGCTGCCGTTGCCGTCACCGCAACCTTGGCCTCCAATGAGTCTCTCACTCCCACCGCCGCGCCGGGCCCGAGCAGCGCTGCCTCCG
CCGCTCTTCCTGCCCTTGGATCGTTGGTTGGCGCCTCATTTATCGCCTACTTCTTGAGCTGAAAAGTCCCCG
Protein sequenceShow/hide protein sequence
MEMKKFVCAALFAAVAVTATLASNESLTPTAAPGPSSAASAALPALGSLVGASFIAYFLS