; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0021152 (gene) of Snake gourd v1 genome

Gene IDTan0021152
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationLG05:62323106..62329903
RNA-Seq ExpressionTan0021152
SyntenyTan0021152
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR019404 - Mediator complex, subunit Med11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]2.9e-5794.92Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEYQVKREDA
        LDGMKQTID+YQVK ED+
Subjt:  LDGMKQTIDEYQVKREDA
XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]4.0e-5998.31Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEYQVKREDA
        LDGMKQTIDEYQVK EDA
Subjt:  LDGMKQTIDEYQVKREDA
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]5.3e-5997.46Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEYQVKREDA
        LDGMKQTIDEYQVK ED+
Subjt:  LDGMKQTIDEYQVKREDA
XP_022973172.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima]5.8e-5896.61Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEY+I K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEYQVKREDA
        LDGMKQTIDEYQVK EDA
Subjt:  LDGMKQTIDEYQVKREDA
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]2.4e-5998.31Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEYQVKREDA
        LDGMKQTIDEYQVK EDA
Subjt:  LDGMKQTIDEYQVKREDA
TrEMBL top hitse value%identityAlignment
A0A0A0L450 Mediator of RNA polymerase II transcription subunit 118.0e-5378.57Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK                      DIQVTLRDEIKSACEYRPFEK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK

Query:  CDYSSRITNELCCKKLEYIISKLDGMKQTIDEYQVKREDA
        CDYSSRITNELCCKKLEY++SKLDGMKQTID+YQVK ED+
Subjt:  CDYSSRITNELCCKKLEYIISKLDGMKQTIDEYQVKREDA
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 111.4e-5794.92Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEYQVKREDA
        LDGMKQTID+YQVK ED+
Subjt:  LDGMKQTIDEYQVKREDA
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 112.0e-5998.31Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEYQVKREDA
        LDGMKQTIDEYQVK EDA
Subjt:  LDGMKQTIDEYQVKREDA
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 112.6e-5997.46Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEYQVKREDA
        LDGMKQTIDEYQVK ED+
Subjt:  LDGMKQTIDEYQVKREDA
A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 112.8e-5896.61Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEY+I K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEYQVKREDA
        LDGMKQTIDEYQVK EDA
Subjt:  LDGMKQTIDEYQVKREDA
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 112.4e-4675.68Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein1.7e-4775.68Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGCTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGCGAATTGTGAGGGTTTTGGAGTTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCC
TGCTGGACCAAGAAAGGAATTTGTCAACAACCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACATTACGGGATGAAATCAAAAGTGCATGTGAATACC
GTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATTATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAG
TATCAAGTGAAAAGGGAAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
TGGAAAAATTAACTCACAAAACTTTCCCTCTGCCAGTCACCAGTCCCATATTTGCCGCAAGCCGTATAACTCCACTCCACCGGCAGTGCCGCTATTTTTTTCTTCTCTCC
GATCTCCACCTCCGCCGCTGCCTCTCGCCGGAACACCCCCACACTGTTATTGTTTCTTCTCTCCCTATCTTCCTCTCTGCTGCAACCTCACGCTGCTACGCCAACCACTG
TCTTCTGCCGCAGTCCCCTCAACTCTTGTTCGCTCGCTGTAGAGAGATTAGTTAGTTTAAAATCCTCCATTGCTGTGAGATCTATCACAGCCAGCGCTGCTCTTGATGGA
TCCGCTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGCGAATTGTGAGGGTTTTGGAGTTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTG
GACCAAGAAAGGAATTTGTCAACAACCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACATTACGGGATGAAATCAAAAGTGCATGTGAATACCGTCCA
TTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATTATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAGTATCA
AGTGAAAAGGGAAGATGCTTGAGGCACAAGTCCCTAATGAGCAGCTCTTCTCTAACTATTTGCCATTTGTCCCATACGGGCTTGTAGATACGAAAGCTTGAAGGGGGACT
TCAGACATGTATGTATATGATATCTTTGGTAGAGCTAATACCATCCACTCATGACTAGTCGACTCATAGCAAGATCCTGTTTTATACCATTACTTTTACAATTCTCTTAT
TATCTGGGGTTTTAATGTCATCCATTTTCGAAAAGGTGACAAATACAAATCCGAGCAGATCTTCTATCTTTAAGGGAGGGATGGCTTCACTATTGATTGTTGTGTGGTAT
TTTCTGTATGTGATATTGGTTGTCTTTTTGGTTGTATTCATTGTTTAAGTGAAGTATTCATTATTGAATTTTGTTGTTCTTCAAATGATTGATTATAACAACCGGTTGTC
TTTCTAGTTAA
Protein sequenceShow/hide protein sequence
MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYIISKLDGMKQTIDE
YQVKREDA