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Tan0021246 (gene) of Snake gourd v1 genome

Gene IDTan0021246
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG02:54775196..54775588
RNA-Seq ExpressionTan0021246
SyntenyTan0021246
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]1.9e-2557.55Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        I+DRL TRDRL RW      S +LC  GVESR HLFF CPF  DVW  V     S+HR+  W VEL WI  +  GK  RRK+W V W ATIY IW ERN 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHGVR
        RLHG R
Subjt:  RLHGVR

KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-2454.81Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        I+DRL TRDR  RW      S +LC  G+ESR HLFF CPF  DVW  V+    S+HR+  W VEL WI  +   K  RRK+W V W ATIY IW ERN 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHG
        RLHG
Subjt:  RLHG

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-2454.81Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        I+DRL TRDR  RW      S +LC  G+ESR HLFF CPF  DVW  V+    S+HR+  W VEL WI  +   K  RRK+W V W ATIY IW ERN 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHG
        RLHG
Subjt:  RLHG

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]7.9e-2454.81Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        I+DRL TRDR  RW      S +LC  G+ESR HLFF CPF  DVW  V+    S+HR+  W VEL WI  +   K  RRK+W V W ATIY IW ERN 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHG
        RLHG
Subjt:  RLHG

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]1.8e-2351.92Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        IRDRL TRDRL +W      S +LC    ESR HLFF CPF  ++W  ++ +  S+HR+  W VEL WI  +  GK  RRK+W + W ATIY IWKERN 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHG
         LHG
Subjt:  RLHG

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932253.8e-2454.81Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        I+DRL TRDR  RW      S +LC  G+ESR HLFF CPF  DVW  V+    S+HR+  W VEL WI  +   K  RRK+W V W ATIY IW ERN 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHG
        RLHG
Subjt:  RLHG

A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein2.1e-2252.88Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        I+++L TRDRL RW      S++LC  GVESR HLFF CPF  DVW  V+    S+HR+  W VEL WI  +  G   RRK+W V   AT Y IWKE N 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHG
        RLHG
Subjt:  RLHG

A0A5A7TZS0 Reverse transcriptase domain-containing protein9.1e-2657.55Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        I+DRL TRDRL RW      S +LC  GVESR HLFF CPF  DVW  V     S+HR+  W VEL WI  +  GK  RRK+W V W ATIY IW ERN 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHGVR
        RLHG R
Subjt:  RLHGVR

A0A5A7UP65 Reverse transcriptase3.8e-2454.81Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        I+DRL TRDR  RW      S +LC  G+ESR HLFF CPF  DVW  V+    S+HR+  W VEL WI  +   K  RRK+W V W ATIY IW ERN 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHG
        RLHG
Subjt:  RLHG

A0A5D3D7P6 Reverse transcriptase3.8e-2454.81Show/hide
Query:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS
        I+DRL TRDR  RW      S +LC  G+ESR HLFF CPF  DVW  V+    S+HR+  W VEL WI  +   K  RRK+W V W ATIY IW ERN 
Subjt:  IRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERNS

Query:  RLHG
        RLHG
Subjt:  RLHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.3e-1140.19Show/hide
Query:  WVHIIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWK
        WV +  +RL TRDRL  WG+      LLC    ESR HLFF+CPF   VW        +          L+W+L  SR K     I  +A+ A +Y IW+
Subjt:  WVHIIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWK

Query:  ERNSRLH
        ERN  LH
Subjt:  ERNSRLH

AT1G45063.1 copper ion binding;electron carriers4.4e-1236.54Show/hide
Query:  IIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERN
        + R+RL   DR   WG+      LLC    E+R H+FFDCPF+ +VW S  C          ++    W+    R K +   I  +A+ A++YHIW+ERN
Subjt:  IIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWKERN

Query:  SRLH
         RL+
Subjt:  SRLH

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein8.2e-1135.4Show/hide
Query:  WHYWVHIIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRV-VGWEVELVWILAKSRG--KLRRRKIWWVAWAAT
        ++ W+  + DRL TR RL  WG + S    LC    ESR HL F C F   VW           R+   W   L W+ + S     L R+    V+  A 
Subjt:  WHYWVHIIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRV-VGWEVELVWILAKSRG--KLRRRKIWWVAWAAT

Query:  IYHIWKERNSRLH
        IY+IW++RN+ LH
Subjt:  IYHIWKERNSRLH

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.7e-1236.45Show/hide
Query:  WVHIIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWK
        WV+ +R RL T+DR+  WG +  P  L C    E+R HLFFDC F  +VW       +     + +E  + W+    + K     I  ++  A++Y IWK
Subjt:  WVHIIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWK

Query:  ERNSRLH
        ERN+RLH
Subjt:  ERNSRLH

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.4e-1233.96Show/hide
Query:  WVHIIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWK
        W+  + +RL TRDRL  WG+    S++LC  G E+  HLFF+C F+  +WE             G      WIL     +     I  +   + +YH+WK
Subjt:  WVHIIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIWK

Query:  ERNSRL
        ERN+R+
Subjt:  ERNSRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTCTTCTTTATTCTTGATTGGCACTATTGGGTTCATATCATACGGGACCGTCTTTCTACCCGTGATCGGCTTTTCCGCTGGGGTGTGGTTTCTTCTCCCTCCTA
TCTTCTATGTCCTGAGGGTGTAGAGTCTCGCGGTCACCTCTTCTTTGACTGCCCATTTAACTGTGACGTCTGGGAGAGTGTAGTGTGTTGGGGTTTGTCTACTCACAGAG
TTGTTGGGTGGGAGGTGGAGCTGGTCTGGATTCTTGCGAAGAGTCGTGGGAAGCTGAGGAGAAGGAAGATCTGGTGGGTAGCGTGGGCTGCAACGATCTATCATATTTGG
AAGGAGCGAAATTCCCGTCTACATGGGGTTAGAATGTTGAGTGCGTTTGGTGTCTTAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTCTTCTTTATTCTTGATTGGCACTATTGGGTTCATATCATACGGGACCGTCTTTCTACCCGTGATCGGCTTTTCCGCTGGGGTGTGGTTTCTTCTCCCTCCTA
TCTTCTATGTCCTGAGGGTGTAGAGTCTCGCGGTCACCTCTTCTTTGACTGCCCATTTAACTGTGACGTCTGGGAGAGTGTAGTGTGTTGGGGTTTGTCTACTCACAGAG
TTGTTGGGTGGGAGGTGGAGCTGGTCTGGATTCTTGCGAAGAGTCGTGGGAAGCTGAGGAGAAGGAAGATCTGGTGGGTAGCGTGGGCTGCAACGATCTATCATATTTGG
AAGGAGCGAAATTCCCGTCTACATGGGGTTAGAATGTTGAGTGCGTTTGGTGTCTTAAACTGA
Protein sequenceShow/hide protein sequence
MKLFFILDWHYWVHIIRDRLSTRDRLFRWGVVSSPSYLLCPEGVESRGHLFFDCPFNCDVWESVVCWGLSTHRVVGWEVELVWILAKSRGKLRRRKIWWVAWAATIYHIW
KERNSRLHGVRMLSAFGVLN