; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0021254 (gene) of Snake gourd v1 genome

Gene IDTan0021254
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionreplication protein A 14 kDa subunit B
Genome locationLG08:68879569..68881693
RNA-Seq ExpressionTan0021254
SyntenyTan0021254
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580705.1 ABC transporter B family member 29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.6e-5783.45Show/hide
Query:  LSKTRALFLLCLSR------TRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFV
        L KT   F  C SR       R + FDF FRRT Q LNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QI VKGSPPF LSKFV
Subjt:  LSKTRALFLLCLSR------TRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFV

Query:  EVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
        EVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLF+
Subjt:  EVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI

XP_022144611.1 replication protein A 14 kDa subunit B [Momordica charantia]7.5e-5776.69Show/hide
Query:  LSLDLSINPSLLNSHTPLQTSILPLSKTRALFLLCLSRTRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD
        LSLDL I   L ++H     +       R+   L L+  R N   F F R+LQSLN+MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD
Subjt:  LSLDLSINPSLLNSHTPLQTSILPLSKTRALFLLCLSRTRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD

Query:  DNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
        DNQIIVKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
Subjt:  DNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI

XP_022943091.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]2.7e-5197.17Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]2.3e-5887.68Show/hide
Query:  SKTRALFLLCLSRTRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIAD
        S+  ALF L     R +RFDF FRRT Q LNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQI VKGSPPF LSKFVEVIGIAD
Subjt:  SKTRALFLLCLSRTRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIAD

Query:  TDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
        TDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLF+
Subjt:  TDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI

XP_023540224.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]1.4e-5096.23Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIY KSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

TrEMBL top hitse value%identityAlignment
A0A0A0LGP0 Uncharacterized protein4.3e-5871.91Show/hide
Query:  MILFVDCSHGLCGTHLSLDLSINPSLLNSHTPLQTSILPLSKTRALFLLCLSRTRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQ
        MI FVDCS G                        T ILPLSKT            F+RFD  FRRTL+SLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQ
Subjt:  MILFVDCSHGLCGTHLSLDLSINPSLLNSHTPLQTSILPLSKTRALFLLCLSRTRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQ

Query:  VQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
        V SE NGV++GKSTDDNQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC  ANGEFKPLFI
Subjt:  VQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI

A0A6J1CTX6 replication protein A 14 kDa subunit B3.6e-5776.69Show/hide
Query:  LSLDLSINPSLLNSHTPLQTSILPLSKTRALFLLCLSRTRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD
        LSLDL I   L ++H     +       R+   L L+  R N   F F R+LQSLN+MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD
Subjt:  LSLDLSINPSLLNSHTPLQTSILPLSKTRALFLLCLSRTRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD

Query:  DNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
        DNQIIVKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGEFKPLFI
Subjt:  DNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI

A0A6J1FQS1 replication protein A 14 kDa subunit B-like1.3e-5197.17Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

A0A6J1J6J3 replication protein A 14 kDa subunit B-like6.6e-5196.23Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

A0A6J1L034 replication protein A 14 kDa subunit B-like1.3e-5197.17Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B8.3e-3565.09Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI

Q9LXK1 Replication protein A 14 kDa subunit A1.3e-3261.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

Q9SDK9 Replication protein A 14 kDa subunit8.9e-2952.83Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS P+ FVN E+L+++VGRRVR V+Q Q E  G++ G+STD +Q+ +KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD + FN LC+LANG+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
         K LF+
Subjt:  FKPLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein9.4e-3461.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein9.4e-3461.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein5.9e-3665.09Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATTGTTCGTTGATTGCTCGCATGGTCTTTGTGGGACCCATCTCTCGCTTGATCTCTCTATAAATCCCTCTCTTCTCAATTCACACACTCCACTCCAAACTTCAAT
TTTGCCGCTTTCAAAAACCCGCGCTCTTTTTCTTCTTTGTCTCTCGCGGACGCGGTTCAATCGATTCGATTTCCAATTCCGGCGAACTCTCCAATCGCTGAATCAGATGG
ATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTCTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTTCAGTCTGAAGGCAATGGAGTCATATAC
GGTAAATCGACAGATGACAACCAGATTATTGTGAAAGGCTCCCCACCCTTTCCTCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACCGACAAATCGATACGAGC
TGATGTATGGACCAATTTCGGCGACTCATTTGATACATCTACCTTCAATCAACTATGTCAGCTTGCTAATGGGGAGTTCAAACCCTTGTTCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATATTGTTCGTTGATTGCTCGCATGGTCTTTGTGGGACCCATCTCTCGCTTGATCTCTCTATAAATCCCTCTCTTCTCAATTCACACACTCCACTCCAAACTTCAAT
TTTGCCGCTTTCAAAAACCCGCGCTCTTTTTCTTCTTTGTCTCTCGCGGACGCGGTTCAATCGATTCGATTTCCAATTCCGGCGAACTCTCCAATCGCTGAATCAGATGG
ATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTCTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTTCAGTCTGAAGGCAATGGAGTCATATAC
GGTAAATCGACAGATGACAACCAGATTATTGTGAAAGGCTCCCCACCCTTTCCTCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACCGACAAATCGATACGAGC
TGATGTATGGACCAATTTCGGCGACTCATTTGATACATCTACCTTCAATCAACTATGTCAGCTTGCTAATGGGGAGTTCAAACCCTTGTTCATCTGATGTTCAAGCTAGA
CACATTCTTTGGCAAGAAAGCTCAACCCCTACCTTCACCTCCTGTGACACGCTAAGTCGCTGATGTTTTCTTCATGTTCTTCCGATGTTCGTACGGTATAAAACTTTTCA
GGTAATTGATATATAAAATTTGAGTATGCAATGTATGTTTGTGTTAGAGTATATTAGAATGAACATTGCTTCAAAATATTCATAAAAAATCTATTTTAATCCATTTTGTT
TGTAGTATTTTAGGGTATAAGCCTTTCAGCCCTTGTGAATGTGAATAAACTGCTAGCCGAAAACTGAAATACTATTTCCATATCTCAGTTTATAAGAAGCC
Protein sequenceShow/hide protein sequence
MILFVDCSHGLCGTHLSLDLSINPSLLNSHTPLQTSILPLSKTRALFLLCLSRTRFNRFDFQFRRTLQSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIY
GKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFI