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Tan0021273 (gene) of Snake gourd v1 genome

Gene IDTan0021273
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG10:30341197..30341583
RNA-Seq ExpressionTan0021273
SyntenyTan0021273
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]8.3e-2649.22Show/hide
Query:  MPKGRTADLRPFDPEIERTCRRLLREERVEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPNSHLKI
        M + R+ D+ P DPEIERT R  LR  ++      D+E++  P+ +++Y +PV N   + I+  PINANNFELK  LI MV+++ F G   +DPN HL +
Subjt:  MPKGRTADLRPFDPEIERTCRRLLREERVEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPNSHLKI

Query:  FLKICGTFKMNGISADSIRLRLFPFSLR
        FL+IC T K+NG++ D+IRLRLFPFSLR
Subjt:  FLKICGTFKMNGISADSIRLRLFPFSLR

PKA48167.1 hypothetical protein AXF42_Ash020512 [Apostasia shenzhenica]8.6e-2345.45Show/hide
Query:  MPKGRTADLRPFDPEIERTCRRL---LREERVEPQ----------EMADQELINNP-KPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESA-
        M +    DL PFDPEIERT  ++   L+E+ V  Q          +M DQ  I    + +REY  P  N     +V   + ANNFE+K  LIQM+++S  
Subjt:  MPKGRTADLRPFDPEIERTCRRL---LREERVEPQ----------EMADQELINNP-KPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESA-

Query:  FRGLATEDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR
        F GL ++DPN+H+  FL+IC TFK NG+S D+IRLRLFPFSL+
Subjt:  FRGLATEDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]5.1e-3158.59Show/hide
Query:  MPKGRTADLRPFDPEIERTCRRLLREERVEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPNSHLKI
        MP+  T +L P DPEI+RT RR LR    +  EMA++     PK IR+YFQP   + Q GI++ PIN NNFELK GLIQM RE AFRG   EDP+ HL+ 
Subjt:  MPKGRTADLRPFDPEIERTCRRLLREERVEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPNSHLKI

Query:  FLKICGTFKMNGISADSIRLRLFPFSLR
        FL+ICGT KMNG+S D+I+LRLFPFSL+
Subjt:  FLKICGTFKMNGISADSIRLRLFPFSLR

XP_022157708.1 uncharacterized protein LOC111024361 [Momordica charantia]1.3e-2362Show/hide
Query:  VEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR
        V+P E    E  NN   IR+Y QP F     GI++ PINANN ELK GLIQMVRE+ FRG ATEDPN+HL IFL +CGT KMNG+  D+IRLRLFP SL+
Subjt:  VEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR

XP_022843226.1 uncharacterized protein LOC111366761 [Olea europaea var. sylvestris]2.1e-2450.38Show/hide
Query:  MPKGRTADLRPFDPEIERTCRRLLREERVEPQEMADQEL-----INNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPN
        M + R  DL   DPE ERT R L   +R E + MA+Q++      N  + IR+Y +PV N   +GI    I A NFELK GLI MV+++ F G A EDPN
Subjt:  MPKGRTADLRPFDPEIERTCRRLLREERVEPQEMADQEL-----INNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPN

Query:  SHLKIFLKICGTFKMNGISADSIRLRLFPFSLR
        +HL  FL+IC T KMNG++ D+IRLRLF FSLR
Subjt:  SHLKIFLKICGTFKMNGISADSIRLRLFPFSLR

TrEMBL top hitse value%identityAlignment
A0A1U8Q202 uncharacterized protein LOC1091142086.0e-2250Show/hide
Query:  PFDPEIERT-CRRL--LREERVEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESA-FRGLATEDPNSHLKIFLKICG
        P+DPEIERT C RL   R+ R E +EMA+      P+ + +Y +P        IV   I+ANNFE+K  +IQM++ +  F G+A EDPNSH+  FL+IC 
Subjt:  PFDPEIERT-CRRL--LREERVEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESA-FRGLATEDPNSHLKIFLKICG

Query:  TFKMNGISADSIRLRLFPFSLR
        TFK NG+S D +RLRLFPFSL+
Subjt:  TFKMNGISADSIRLRLFPFSLR

A0A2H9ZY12 Uncharacterized protein4.2e-2345.45Show/hide
Query:  MPKGRTADLRPFDPEIERTCRRL---LREERVEPQ----------EMADQELINNP-KPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESA-
        M +    DL PFDPEIERT  ++   L+E+ V  Q          +M DQ  I    + +REY  P  N     +V   + ANNFE+K  LIQM+++S  
Subjt:  MPKGRTADLRPFDPEIERTCRRL---LREERVEPQ----------EMADQELINNP-KPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESA-

Query:  FRGLATEDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR
        F GL ++DPN+H+  FL+IC TFK NG+S D+IRLRLFPFSL+
Subjt:  FRGLATEDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR

A0A6J1DU19 uncharacterized protein LOC1110243616.5e-2462Show/hide
Query:  VEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR
        V+P E    E  NN   IR+Y QP F     GI++ PINANN ELK GLIQMVRE+ FRG ATEDPN+HL IFL +CGT KMNG+  D+IRLRLFP SL+
Subjt:  VEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR

A0A6P6W382 uncharacterized protein LOC1137297691.3e-2145.26Show/hide
Query:  DLRPFDPEIERTCRRLLR----EERVEPQEMADQELIN------------NPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLAT
        ++ PFDPEIER  RR  R    +E  E  +  ++ LI             N + +R++  P     Q  I    +NANNFE+K  LIQMV++S + G AT
Subjt:  DLRPFDPEIERTCRRLLR----EERVEPQEMADQELIN------------NPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLAT

Query:  EDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR
        EDPNSHL  FL+IC T K NG+S D+I+LRLFPFSL+
Subjt:  EDPNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR

A0A6P6X8N4 uncharacterized protein LOC1137407887.9e-2247.41Show/hide
Query:  FDPEIERTCRRLLR-------EERVEP-----------QEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATED
        FDPEIERT +R  R       +E  +P           +EMA+ E   N + +R++  P  +  Q  I    +NANNFE+K+ LIQMV++S + G ATED
Subjt:  FDPEIERTCRRLLR-------EERVEP-----------QEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATED

Query:  PNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR
        PNSHL  FL+IC T K NG+S D+I+LRLFPFSLR
Subjt:  PNSHLKIFLKICGTFKMNGISADSIRLRLFPFSLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAGGGGAGAACTGCAGACTTGCGCCCTTTTGATCCTGAGATTGAAAGGACCTGTAGGAGACTCCTAAGGGAAGAAAGAGTAGAACCTCAGGAGATGGCTGATCA
GGAGCTCATCAACAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGGCTGGAATAGTCCATGCCCCTATCAATGCTAATAACTTTGAACTGA
AAACAGGGCTGATACAAATGGTTAGGGAAAGTGCTTTCAGAGGCCTAGCCACAGAAGATCCTAACTCTCATCTTAAAATTTTTTTGAAAATCTGTGGTACATTTAAAATG
AATGGTATCTCTGCCGATAGTATTCGCTTACGTCTCTTTCCTTTTTCTTTGCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAGGGGAGAACTGCAGACTTGCGCCCTTTTGATCCTGAGATTGAAAGGACCTGTAGGAGACTCCTAAGGGAAGAAAGAGTAGAACCTCAGGAGATGGCTGATCA
GGAGCTCATCAACAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGGCTGGAATAGTCCATGCCCCTATCAATGCTAATAACTTTGAACTGA
AAACAGGGCTGATACAAATGGTTAGGGAAAGTGCTTTCAGAGGCCTAGCCACAGAAGATCCTAACTCTCATCTTAAAATTTTTTTGAAAATCTGTGGTACATTTAAAATG
AATGGTATCTCTGCCGATAGTATTCGCTTACGTCTCTTTCCTTTTTCTTTGCGGTAG
Protein sequenceShow/hide protein sequence
MPKGRTADLRPFDPEIERTCRRLLREERVEPQEMADQELINNPKPIREYFQPVFNSEQAGIVHAPINANNFELKTGLIQMVRESAFRGLATEDPNSHLKIFLKICGTFKM
NGISADSIRLRLFPFSLR