; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0021347 (gene) of Snake gourd v1 genome

Gene IDTan0021347
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionnuclear transport factor 2
Genome locationLG05:83326591..83328204
RNA-Seq ExpressionTan0021347
SyntenyTan0021347
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584071.1 Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia]4.2e-5486.18Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGVDDIS++ QQLPFERCRHVVSTVD QPS  PGS LIFVSGSLELPDEEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPTLQGNLFVQNDIFRLNY
        MFHLVPT QGNL VQNDIFRLNY
Subjt:  MFHLVPTLQGNLFVQNDIFRLNY

XP_008441397.1 PREDICTED: nuclear transport factor 2 [Cucumis melo]7.6e-5683.33Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF
        MEE+Q DI+GKAFVEHYY LFDN+RAS+S LYQPDSMLTFEGQQ LGV+DISTK QQLPFERCRHVVST+D QPS  PGS LIFVSGS+E+P+EEHPLR+
Subjt:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPTLQGNLFVQNDIFRLNYG
        SQMFHLVP+ QGNLFVQNDIFRLNYG
Subjt:  SQMFHLVPTLQGNLFVQNDIFRLNYG

XP_022933198.1 nuclear transport factor 2B [Cucurbita moschata]6.4e-5586.29Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGVDDIS++ QQLPFERCRHVVSTVD QPS  PGS LIFVSGSLELPDEEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPTLQGNLFVQNDIFRLNYG
        MFHLVPT QGNL VQNDIFRLNYG
Subjt:  MFHLVPTLQGNLFVQNDIFRLNYG

XP_023001318.1 nuclear transport factor 2B [Cucurbita maxima]1.6e-5383.87Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGV DIS++ QQLPFERCRHVVSTVD QPS  PGS LIFVSGSLELP+EEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPTLQGNLFVQNDIFRLNYG
        MFHLVPT QGNL +QNDIFRLNYG
Subjt:  MFHLVPTLQGNLFVQNDIFRLNYG

XP_023519037.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]5.5e-5484.68Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ
        E++ DIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGVDDIS++ QQLPFERCRHVVSTVD QPS  PGS LIFVSGSLELP+EEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPTLQGNLFVQNDIFRLNYG
        MFHLVPT QGNL VQNDIFRLNYG
Subjt:  MFHLVPTLQGNLFVQNDIFRLNYG

TrEMBL top hitse value%identityAlignment
A0A0A0LUU9 NTF2 domain-containing protein1.7e-5381.45Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ
        E++ DI+GKAFVEHYYQLFDN+RAS+S LYQPDSMLTFEGQQ LGV DIS+K QQLPFERCRHVVST+D QPS   GS LIFVSGS+E+P+EEHPLRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPTLQGNLFVQNDIFRLNYG
        MFHLVP+ +GNLFVQNDIFRLNYG
Subjt:  MFHLVPTLQGNLFVQNDIFRLNYG

A0A1S3B3B7 nuclear transport factor 23.7e-5683.33Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF
        MEE+Q DI+GKAFVEHYY LFDN+RAS+S LYQPDSMLTFEGQQ LGV+DISTK QQLPFERCRHVVST+D QPS  PGS LIFVSGS+E+P+EEHPLR+
Subjt:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPTLQGNLFVQNDIFRLNYG
        SQMFHLVP+ QGNLFVQNDIFRLNYG
Subjt:  SQMFHLVPTLQGNLFVQNDIFRLNYG

A0A6J1CEC9 nuclear transport factor 21.9e-5281.45Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ
        E+++++VG+AFVEHYYQLFDN+RASVS LYQP+SMLTFEGQ+ LGVDDIS++ QQLPFERCRHVVST+D QPS A GS LIFVSGSLELP EEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPTLQGNLFVQNDIFRLNYG
        MFHLVPT QG+LFVQNDIFRLNYG
Subjt:  MFHLVPTLQGNLFVQNDIFRLNYG

A0A6J1F427 nuclear transport factor 2B3.1e-5586.29Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGVDDIS++ QQLPFERCRHVVSTVD QPS  PGS LIFVSGSLELPDEEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPTLQGNLFVQNDIFRLNYG
        MFHLVPT QGNL VQNDIFRLNYG
Subjt:  MFHLVPTLQGNLFVQNDIFRLNYG

A0A6J1KQ62 nuclear transport factor 2B7.7e-5483.87Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGV DIS++ QQLPFERCRHVVSTVD QPS  PGS LIFVSGSLELP+EEH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQ

Query:  MFHLVPTLQGNLFVQNDIFRLNYG
        MFHLVPT QGNL +QNDIFRLNYG
Subjt:  MFHLVPTLQGNLFVQNDIFRLNYG

SwissProt top hitse value%identityAlignment
Q10100 Nuclear transport factor 23.8e-2650Show/hide
Query:  FVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQG
        F + YYQ FD+DR+ +S LY+ +SML+FEG Q  G   I  K   LPF+R +H +ST+DAQP+   GS ++ V+G L L +E+   R+SQ+FHLV    G
Subjt:  FVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQG

Query:  NLFVQNDIFRLNYG
        N +V ND+FRLNYG
Subjt:  NLFVQNDIFRLNYG

Q8NJ52 Nuclear transport factor 24.2e-2547.86Show/hide
Query:  VGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVP
        + + F E YY+ FD DRA ++ LY+ +SMLTFE   FLG  +I  K Q+LPF+R  H V+TVDAQPS   G  L+ VSG+L + +E  P+ ++Q F L+P
Subjt:  VGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVP

Query:  TLQGNLFVQNDIFRLNY
           G  +V ND+FRL Y
Subjt:  TLQGNLFVQNDIFRLNY

Q9C7F5 Nuclear transport factor 2B4.1e-3657.6Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF
        M +   D V KAFVEHYY  FD +R  ++ LYQ  SMLTFEGQ+  GV  I  K   LPF++C+H +STVD QPS      L+FVSG+L+L  EEH L+F
Subjt:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPTLQGNLFVQNDIFRLNY
        SQMFHL+PT QG+ +V NDIFRLNY
Subjt:  SQMFHLVPTLQGNLFVQNDIFRLNY

Q9FZK4 Nuclear transport factor 2A7.2e-3357.14Show/hide
Query:  DIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHL
        D V KAFVEHYY  FD +R  +  LYQ  SMLTFEGQ+  G  +I  K   LPF++C+H ++TVD QPS   G  L+FVSG+L+L  E+H L+FSQMFHL
Subjt:  DIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHL

Query:  VPTLQGNLFVQNDIFRLNY
        +   QGN +V NDIFRLNY
Subjt:  VPTLQGNLFVQNDIFRLNY

Q9XJ54 Nuclear transport factor 29.1e-3660.33Show/hide
Query:  ADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFH
        AD V KAFVEHYY+ FD +R ++  LYQ  SMLTFEGQQFLG   I+ K   LPF +C H ++TVD QPS   G  L+FVSGSL    +EHPL+FSQMF 
Subjt:  ADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFH

Query:  LVPTLQGNLFVQNDIFRLNYG
        L+P   GN +VQND+FRLNYG
Subjt:  LVPTLQGNLFVQNDIFRLNYG

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like6.9e-3160.4Show/hide
Query:  VGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAP---GSFLIFVSGSLELPDEEHPLRFSQMFH
        V  AFV HYY LFDNDR+S+S LY P S+LTFEGQ   GVD+IS K +QLPF++C H++STVD+QPS      G  L+FVSGS++L  E+HPLRFSQ++ 
Subjt:  VGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAP---GSFLIFVSGSLELPDEEHPLRFSQMFH

Query:  L
        L
Subjt:  L

AT1G11570.2 NTF2-like3.0e-4263.64Show/hide
Query:  VGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAP---GSFLIFVSGSLELPDEEHPLRFSQMFH
        V  AFV HYY LFDNDR+S+S LY P S+LTFEGQ   GVD+IS K +QLPF++C H++STVD+QPS      G  L+FVSGS++L  E+HPLRFSQ FH
Subjt:  VGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAP---GSFLIFVSGSLELPDEEHPLRFSQMFH

Query:  LVPTLQGNLFVQNDIFRLNYG
        L+P LQG+ FVQN++FRLNYG
Subjt:  LVPTLQGNLFVQNDIFRLNYG

AT1G27310.1 nuclear transport factor 2A5.1e-3457.14Show/hide
Query:  DIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHL
        D V KAFVEHYY  FD +R  +  LYQ  SMLTFEGQ+  G  +I  K   LPF++C+H ++TVD QPS   G  L+FVSG+L+L  E+H L+FSQMFHL
Subjt:  DIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHL

Query:  VPTLQGNLFVQNDIFRLNY
        +   QGN +V NDIFRLNY
Subjt:  VPTLQGNLFVQNDIFRLNY

AT1G27970.1 nuclear transport factor 2B2.9e-3757.6Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF
        M +   D V KAFVEHYY  FD +R  ++ LYQ  SMLTFEGQ+  GV  I  K   LPF++C+H +STVD QPS      L+FVSG+L+L  EEH L+F
Subjt:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPTLQGNLFVQNDIFRLNY
        SQMFHL+PT QG+ +V NDIFRLNY
Subjt:  SQMFHLVPTLQGNLFVQNDIFRLNY

AT1G27970.2 nuclear transport factor 2B1.0e-3456.2Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF
        M +   D V KAFVEHYY  FD +R  ++ LYQ  SMLTFEGQ+  GV  I  K   LPF++C+H +STVD QPS      L+FVSG+L+L  EEH L+F
Subjt:  MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRF

Query:  SQMFHLVPTLQGNLFVQNDIF
        SQMFHL+PT QG+ +V NDIF
Subjt:  SQMFHLVPTLQGNLFVQNDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGATCAAGCTGATATTGTGGGGAAGGCGTTTGTGGAACATTATTACCAATTGTTTGACAATGATAGAGCCTCTGTTTCTTGTTTGTACCAACCTGACTCTAT
GCTCACTTTCGAGGGCCAGCAATTCTTAGGCGTTGACGACATCTCTACTAAGTTTCAGCAATTGCCATTTGAACGGTGCCGACATGTCGTCAGCACCGTCGATGCCCAGC
CTTCCATCGCTCCCGGTTCTTTTCTTATCTTCGTCAGCGGCAGCCTCGAGTTGCCCGACGAAGAACACCCGTTGAGATTCAGTCAGATGTTTCACTTGGTACCCACATTA
CAGGGCAACCTTTTCGTTCAAAACGATATTTTTCGCCTCAATTACGGCTAG
mRNA sequenceShow/hide mRNA sequence
GCTTGTTTCAACTTACAAGTCTGTGTTCTTTCAAATTAGAGTGCTTGCAAATAGAGAAAGGAGATGGAAGAAGATCAAGCTGATATTGTGGGGAAGGCGTTTGTGGAACA
TTATTACCAATTGTTTGACAATGATAGAGCCTCTGTTTCTTGTTTGTACCAACCTGACTCTATGCTCACTTTCGAGGGCCAGCAATTCTTAGGCGTTGACGACATCTCTA
CTAAGTTTCAGCAATTGCCATTTGAACGGTGCCGACATGTCGTCAGCACCGTCGATGCCCAGCCTTCCATCGCTCCCGGTTCTTTTCTTATCTTCGTCAGCGGCAGCCTC
GAGTTGCCCGACGAAGAACACCCGTTGAGATTCAGTCAGATGTTTCACTTGGTACCCACATTACAGGGCAACCTTTTCGTTCAAAACGATATTTTTCGCCTCAATTACGG
CTAGTTCAGGGTTTGTTCGAGACTGCATTTGAACAGAGAAACGCTGTCGTTTATTGGGATATGATTTGTTTTCTGGTTCTTATCTAAATATACAAATTCCTGATTTTGTT
ATTCTGTTGTATGTTCTGTTTCGTATCTCTCTTTATTATTTTCGGGCTTTGAATGTCGGCCCAATAACTGAGCCCGTTGACTTTCCTGGCCCAATTTCTCGCGTCAAAGA
GGCCCATGGTGGTAAATGAGATGGTTGCTTGAGACGTAGAGATCAAAAAAAAGAAAGAAATTTCTGGTCCTTTTTTGAGTTCAACCAGACCTGGAGTGAAAGATGTTTGA
ATAATAAATCTCTTCATCCAGAATGTATACCAAAATCAATCAAACTATTCTCAAGTTAGTACGTAAAGATCAAAGTTAGTCTTCGATCAATTTAAGGAAATATTTTTGTG
ACTAGCGAACAAAAA
Protein sequenceShow/hide protein sequence
MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTL
QGNLFVQNDIFRLNYG