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Tan0021350 (gene) of Snake gourd v1 genome

Gene IDTan0021350
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionzf-RVT domain-containing protein
Genome locationLG09:55525369..55533544
RNA-Seq ExpressionTan0021350
SyntenyTan0021350
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.0e-0538.82Show/hide
Query:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSRE
        WK      WKLN D AW    N  G+GWI+ D     +  GC+ I   R I  LE +AI EGL    A ++     + +ESDS E
Subjt:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSRE

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.0e-0538.82Show/hide
Query:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSRE
        WK      WKLN D AW    N  G+GWI+ D     +  GC+ I   R I  LE +AI EGL    A ++     + +ESDS E
Subjt:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSRE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.0e-0537.21Show/hide
Query:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSREI
        W+   +  W LN D +WS   ++GG+GWII       V+ G + +     +K LEA AILEGL        G L  L +E+DS E+
Subjt:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSREI

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]2.0e-1232.35Show/hide
Query:  MMDFQPKICVKNLGFHHSDHRPILASWSVVGKDDIDKKHHRRGIQRFEENWYNKEECKRIIHNVWTSYRTITSRGYHNKLGQCLRSLKNWDKERFNGSLK
        +   Q  + +++L F  SDHRPILA W  VG+  + ++  RR   RFEE W++ +ECK I+  VW     +    +  K+  CL  L  W+  R  GSL+
Subjt:  MMDFQPKICVKNLGFHHSDHRPILASWSVVGKDDIDKKHHRRGIQRFEENWYNKEECKRIIHNVWTSYRTITSRGYHNKLGQCLRSLKNWDKERFNGSLK

Query:  GAFPGKRQKSTKSLMRSSGAMTQKGSFHWRPRAWKS
        GA   K  +  +        M + G+  WR   W++
Subjt:  GAFPGKRQKSTKSLMRSSGAMTQKGSFHWRPRAWKS

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]2.8e-0638.83Show/hide
Query:  VKNLGFHHSDHRPILASWSVVGKDDIDKK---HHRRGIQRFEENWYNKEECKRIIHNVWTSYRTITSRGYHNKLGQCLRSLKNWDKERFNGSLKGAFPGK
        V +L    SDHRPILASW      ++ +    H +R I RFEE+W   + C+ II   W S   I    +  K+  CL  L  W+K R N SLKGA   K
Subjt:  VKNLGFHHSDHRPILASWSVVGKDDIDKK---HHRRGIQRFEENWYNKEECKRIIHNVWTSYRTITSRGYHNKLGQCLRSLKNWDKERFNGSLKGAFPGK

Query:  RQK
         ++
Subjt:  RQK

TrEMBL top hitse value%identityAlignment
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X15.1e-0638.82Show/hide
Query:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSRE
        WK      WKLN D AW    N  G+GWI+ D     +  GC+ I   R I  LE +AI EGL    A ++     + +ESDS E
Subjt:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSRE

A0A6J1DNV9 uncharacterized protein LOC1110224031.9e-0537.21Show/hide
Query:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSREI
        W+   +  W LN D +WS   ++GG+GWII       V+ G + +     +K LEA AILEGL        G L  L +E+DS E+
Subjt:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSREI

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X25.1e-0638.82Show/hide
Query:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSRE
        WK      WKLN D AW    N  G+GWI+ D     +  GC+ I   R I  LE +AI EGL    A ++     + +ESDS E
Subjt:  WKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSRE

A0A6J1DRA0 uncharacterized protein LOC1110224239.5e-1332.35Show/hide
Query:  MMDFQPKICVKNLGFHHSDHRPILASWSVVGKDDIDKKHHRRGIQRFEENWYNKEECKRIIHNVWTSYRTITSRGYHNKLGQCLRSLKNWDKERFNGSLK
        +   Q  + +++L F  SDHRPILA W  VG+  + ++  RR   RFEE W++ +ECK I+  VW     +    +  K+  CL  L  W+  R  GSL+
Subjt:  MMDFQPKICVKNLGFHHSDHRPILASWSVVGKDDIDKKHHRRGIQRFEENWYNKEECKRIIHNVWTSYRTITSRGYHNKLGQCLRSLKNWDKERFNGSLK

Query:  GAFPGKRQKSTKSLMRSSGAMTQKGSFHWRPRAWKS
        GA   K  +  +        M + G+  WR   W++
Subjt:  GAFPGKRQKSTKSLMRSSGAMTQKGSFHWRPRAWKS

A0A6J1DUG8 uncharacterized protein LOC1110241351.3e-0638.83Show/hide
Query:  VKNLGFHHSDHRPILASWSVVGKDDIDKK---HHRRGIQRFEENWYNKEECKRIIHNVWTSYRTITSRGYHNKLGQCLRSLKNWDKERFNGSLKGAFPGK
        V +L    SDHRPILASW      ++ +    H +R I RFEE+W   + C+ II   W S   I    +  K+  CL  L  W+K R N SLKGA   K
Subjt:  VKNLGFHHSDHRPILASWSVVGKDDIDKK---HHRRGIQRFEENWYNKEECKRIIHNVWTSYRTITSRGYHNKLGQCLRSLKNWDKERFNGSLKGAFPGK

Query:  RQK
         ++
Subjt:  RQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGACTTTCAACCCAAGATTTGTGTGAAGAATTTGGGTTTTCACCATTCTGATCACCGACCTATATTGGCCTCCTGGTCAGTTGTTGGAAAGGATGACATTGACAA
GAAACATCATCGACGAGGGATCCAACGTTTTGAGGAGAATTGGTATAACAAAGAGGAATGTAAAAGAATAATTCACAATGTTTGGACTAGCTACAGAACCATCACAAGTA
GGGGTTACCACAACAAGCTTGGTCAATGTCTCAGGAGTTTGAAAAATTGGGATAAGGAAAGGTTTAATGGTTCCTTAAAAGGAGCATTTCCAGGAAAGAGGCAGAAATCA
ACGAAATCTTTGATGAGATCATCTGGGGCAATGACTCAAAAGGGAAGTTTTCATTGGAGGCCAAGAGCCTGGAAGTCATCTGAGTTAGCTGACTGGAAACTCAATAATGA
TGTAGCTTGGTCTTACAAGTTGAACAAGGGTGGTGTGGGTTGGATCATCAGTGATAACATGGTTCATCCGGTGATAGGAGGCTGCAAGCATATCGGCCAGAGTAGGCCTA
TCAAAACTCTTGAAGCTTTGGCAATTTTAGAAGGTCTGACGGAGTTTTTGGCTTGGAAAAAGGGTCAACTGCCGACTTTGATTGTGGAGTCTGATTCTAGGGAGATTTTT
ATCAATCTCATAGACAACAGTCCAAGAGAATACAAGAACCACCTTGTGTTGGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGACTTTCAACCCAAGATTTGTGTGAAGAATTTGGGTTTTCACCATTCTGATCACCGACCTATATTGGCCTCCTGGTCAGTTGTTGGAAAGGATGACATTGACAA
GAAACATCATCGACGAGGGATCCAACGTTTTGAGGAGAATTGGTATAACAAAGAGGAATGTAAAAGAATAATTCACAATGTTTGGACTAGCTACAGAACCATCACAAGTA
GGGGTTACCACAACAAGCTTGGTCAATGTCTCAGGAGTTTGAAAAATTGGGATAAGGAAAGGTTTAATGGTTCCTTAAAAGGAGCATTTCCAGGAAAGAGGCAGAAATCA
ACGAAATCTTTGATGAGATCATCTGGGGCAATGACTCAAAAGGGAAGTTTTCATTGGAGGCCAAGAGCCTGGAAGTCATCTGAGTTAGCTGACTGGAAACTCAATAATGA
TGTAGCTTGGTCTTACAAGTTGAACAAGGGTGGTGTGGGTTGGATCATCAGTGATAACATGGTTCATCCGGTGATAGGAGGCTGCAAGCATATCGGCCAGAGTAGGCCTA
TCAAAACTCTTGAAGCTTTGGCAATTTTAGAAGGTCTGACGGAGTTTTTGGCTTGGAAAAAGGGTCAACTGCCGACTTTGATTGTGGAGTCTGATTCTAGGGAGATTTTT
ATCAATCTCATAGACAACAGTCCAAGAGAATACAAGAACCACCTTGTGTTGGGATAA
Protein sequenceShow/hide protein sequence
MMDFQPKICVKNLGFHHSDHRPILASWSVVGKDDIDKKHHRRGIQRFEENWYNKEECKRIIHNVWTSYRTITSRGYHNKLGQCLRSLKNWDKERFNGSLKGAFPGKRQKS
TKSLMRSSGAMTQKGSFHWRPRAWKSSELADWKLNNDVAWSYKLNKGGVGWIISDNMVHPVIGGCKHIGQSRPIKTLEALAILEGLTEFLAWKKGQLPTLIVESDSREIF
INLIDNSPREYKNHLVLG