CuGenDBv2

Gene ID	Tan0021559
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	LG02:89526437..89537240
RNA-Seq Expression	Tan0021559
Synteny	Tan0021559
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain IPR040504 - TFIIF, beta subunit, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008444765.1 PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo]

3.6e-116

91.95

Show/hide

Query:  MEDENG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED++G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDENG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        LFERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

XP_022144312.1 transcription initiation factor IIF subunit beta [Momordica charantia]

6.1e-116

92.37

Show/hide

Query:  MEDEN-GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+ GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEN-GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKMSMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        LFERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

XP_022951326.1 transcription initiation factor IIF subunit beta [Cucurbita moschata]

1.4e-117

92.34

Show/hide

Query:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
Subjt:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
        QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKL
Subjt:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        FERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

XP_023002475.1 transcription initiation factor IIF subunit beta [Cucurbita maxima]

1.4e-117

92.34

Show/hide

Query:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
Subjt:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
        QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKL
Subjt:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        FERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

XP_038884084.1 transcription initiation factor IIF subunit beta-like [Benincasa hispida]

5.9e-119

93.62

Show/hide

Query:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
Subjt:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
        QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
Subjt:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        FERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BBV5 Transcription initiation factor IIF subunit beta

1.7e-116

91.95

Show/hide

Query:  MEDENG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED++G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDENG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        LFERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

A0A5A7VAJ9 Transcription initiation factor IIF subunit beta

1.7e-116

91.95

Show/hide

Query:  MEDENG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED++G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDENG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        LFERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

A0A6J1CTB7 Transcription initiation factor IIF subunit beta

2.9e-116

92.37

Show/hide

Query:  MEDEN-GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+ GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEN-GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKMSMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        LFERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  LFERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

A0A6J1GH97 Transcription initiation factor IIF subunit beta

7.0e-118

92.34

Show/hide

Query:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
Subjt:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
        QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKL
Subjt:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        FERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

A0A6J1KP21 Transcription initiation factor IIF subunit beta

7.0e-118

92.34

Show/hide

Query:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
Subjt:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
        QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKL
Subjt:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
        FERQPNWALKQLVQETDQPA  L  + +   ++ +
Subjt:  FERQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

SwissProt top hits

e value

%identity

Alignment

P13984 General transcription factor IIF subunit 2

4.8e-07

27.27

Show/hide

Query:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W     S    + K  L +   Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  MSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        +S+EG V  + + +P +   E Y +L R +  +S    R  Q +D     + +P+      I    K+K+        D KR R D+  + D++F  FE+
Subjt:  MSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQPAVCL
           + LK LV  T QP V L
Subjt:  QPNWALKQLVQETDQPAVCL

P41900 General transcription factor IIF subunit 2

7.5e-08

25.76

Show/hide

Query:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPS----------DPLPLAKVILSLDP----LQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVP-----
        +LD   A R VWL+K P  +A+ W+  P +           P   A+V LSL P    L  +E    +  ++++      V K  +L +F    P     
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPS----------DPLPLAKVILSLDP----LQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVP-----

Query:  --MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDR
              ++    K+ MEG++  K + +P ++N   Y KL  E   K+    R++Q ID    +     P      +   +E+KK      ++ K+ R D+
Subjt:  --MCVFSEASQGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDR

Query:  GELEDIMFKLFERQPNWALKQLVQETDQP
          + D++F  FE+   + +K LV+ T+QP
Subjt:  GELEDIMFKLFERQPNWALKQLVQETDQP

Q01750 General transcription factor IIF subunit 2

2.2e-07

26.39

Show/hide

Query:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  MSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        +S+EG V  + + +P +   E Y KL R +  +S    R  Q  D     + +P+      I    K+K+        D KR R D+  + D++F  FE+
Subjt:  MSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQP
           + LK LV  T QP
Subjt:  QPNWALKQLVQETDQP

Q2T9L9 General transcription factor IIF subunit 2

2.2e-07

25.93

Show/hide

Query:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  MSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        +S+EG V  + + +P +   E Y +L R +  +S    R  Q +D     + +P+      I    K+K+        D KR R D+  + D++F  FE+
Subjt:  MSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQP
           + LK LV  T QP
Subjt:  QPNWALKQLVQETDQP

Q54KT7 General transcription factor IIF subunit 2

1.3e-07

25.22

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Query:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        M +E        ++T  AD  VWL+K P  +++SWQ         + +  +    ++  ++ SL +     G + G   +  +     D  P+ +FSE  
Subjt:  MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISST--SKEKKKVAPV-----KQSDVKRTRRDRGEL
         G +++EG +  + D+K   E+   Y  L + R  K   K R  QVID               L + T     K KV+ V     K+S  K+ +    E+
Subjt:  QGKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISST--SKEKKKVAPV-----KQSDVKRTRRDRGEL

Query:  EDIMFKLFERQPNWALKQLVQETDQP
         D++F  F  + +  LK L   T+QP
Subjt:  EDIMFKLFERQPNWALKQLVQETDQP

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

1.5e-75

61.8

Show/hide

Query:  NLDTGKADRSVWLMKCPLLVAKSW--------QSHPPSD-PLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQG
        NLD  K+DRS+WLMKCP++V K+W         S   SD P  +AK++  +DPL+ D  S  +FKM M G E GN+PK ++LNMF DFVPM  FS+ +QG
Subjt:  NLDTGKADRSVWLMKCPLLVAKSW--------QSHPPSD-PLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQG

Query:  KMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFE
          + EGKV+HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHMRPMPGM+GL+SS SKEK+K  PVKQ++VKRTRRDRGELE IMFKLFE
Subjt:  KMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFE

Query:  RQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE
         QPNW LKQLVQETDQPA  L  + +   ++ +
Subjt:  RQPNWALKQLVQETDQPAVCLLIVFSFFSIFQE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

3.4e-64

59.53

Show/hide

Query:  LDTGKADRSVWLMKCPLLVAKSWQSHP-------PSDPL-PLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKM
        L+TG A+RS+ LMK P LVA S QSH        P DP  P AKVIL +DPL + E    QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S GKM
Subjt:  LDTGKADRSVWLMKCPLLVAKSWQSHP-------PSDPL-PLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKM

Query:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ
        S+EGK+++KFDM+PH+EN+E YG+LCRERTNK M KNRQIQVIDN RG+HMRPMPGM+  I + + EKKK+   + S++KRTRRDR E+E++MF LFERQ
Subjt:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ

Query:  PNWALKQLVQETDQP
         NW L+ L+QETDQP
Subjt:  PNWALKQLVQETDQP

Sequences

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CDS sequence

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ATGGAAGACGAGAACGGCGGCGGTAGTAGCAGTAACTTGGATACAGGGAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTAGTCGCTAAGTCATGGCAGTC
TCATCCTCCATCTGATCCTCTCCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTTCAATCCGACGAGTCCTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACTG
AGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGTAAGATGTCAATGGAAGGGAAAGTG
GAACATAAATTCGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGAT
AGACAACGACCGTGGAGTGCATATGAGGCCAATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCACCAGTTAAACAATCAGACGTGA
AAAGAACTAGAAGGGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCT
GTATGTCTACTGATCGTTTTCTCATTTTTTAGCATTTTTCAAGAATATTACTCTTTCGCTGTTTTCGCGAAACTGTCGCTGGAGAGGATATCTAATGAGAAGATCAGTAT
ATTTCTCTCGACATAG

mRNA sequence

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CAAAAGGTCGTCATTCGATGCAGAGACACTTATTTCAGAATCCAGATTAGATCAGTTGTACGATAATCTTCTGGTATCGATTGCGTAATATCAAAGCTCCTTCCGACCAC
CGCCTTCCAGTTCTTTAGGGTCCAGTCCAGTTCCGTCCACGGACCTTTACGCCTCCGTCGTCTGAAAAAAAGAAACAGAGTTGCTGAAATCTCGCCGGCGAAAGTTCAGA
CCGGAGAGGGGAGAGAGAGATTCTGTAATCTGATAGATATGGAAGACGAGAACGGCGGCGGTAGTAGCAGTAACTTGGATACAGGGAAGGCGGATAGATCAGTGTGGCTG
ATGAAGTGCCCGTTGCTAGTCGCTAAGTCATGGCAGTCTCATCCTCCATCTGATCCTCTCCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTTCAATCCGACGAGTC
CTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAG
AGGCAAGTCAAGGTAAGATGTCAATGGAAGGGAAAGTGGAACATAAATTCGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACA
AACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAACGACCGTGGAGTGCATATGAGGCCAATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGA
AAAGAAGAAGGTGGCACCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGGGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGG
CCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCTGTATGTCTACTGATCGTTTTCTCATTTTTTAGCATTTTTCAAGAATATTACTCTTTCGCTGTTTTCGCGAAA
CTGTCGCTGGAGAGGATATCTAATGAGAAGATCAGTATATTTCTCTCGACATAGACAAGATACCACACAGCCTACCCTTAGAACTCAAAAGTTCATTATAGATCCATACA
CCAATTCTTGAAAGAGATACTGAATGAGCTTTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACATATGAGCTTAAGCCCGAATACAAGAAATCGGTCGAGGATACCG
GCGGAGAGTAGGTTAGTCTTTGACTGTATCATTTTATATATTCCCTTCTCTTTTGGGTTAGGTGGAAACGATCTGAAATAAATCTGCTAATTAAGAAGAAAAAAAGGATT
TTGCTTTTGTCATATTTTCATGGGAGGGAGAGATGGGAAGAAGAAAAGAAAAGGTGGTTTAAAATAATTTCTAGGTAGCTTTATACTAAAGTGAAACCAAAGATGAAATG
AAAGTTGGGGGGAAGTTCTTATGTCATGTTTATCCAATTACGTACATGGTCGGAAGTTGCAAAATGTATCTGTAATTCTGTATAATGAATTTTATGAACATGCGAAGATG
TTGGAAAACAGAGGTCACAAACTTGATTGTTCATTGACTTTCATTTTGCTTAGTTTTTTTTCTAATTACTAGCCAAGGCAATTGTTTTTGTCGTGCCTAATCATAGATTG
CAGTGGTAAGAGGAATAGGATTTGAAAATCTGTCTCCTAGTCTTTTCATATGAGATATTTAGGTTGTGTTGGGTTGGTG

Protein sequence

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MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKV
EHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA
VCLLIVFSFFSIFQEYYSFAVFAKLSLERISNEKISIFLST

Tan0021559 (gene) of Snake gourd v1 genome