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Tan0021621 (gene) of Snake gourd v1 genome

Gene IDTan0021621
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptiontRNA-splicing endonuclease subunit Sen54
Genome locationLG10:66553653..66555736
RNA-Seq ExpressionTan0021621
SyntenyTan0021621
Gene Ontology termsGO:0008033 - tRNA processing (biological process)
InterPro domainsIPR024337 - tRNA-splicing endonuclease, subunit Sen54


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596967.1 Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia]3.4e-7760.9Show/hide
Query:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQDI++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGK+ CIWE+FEV          +G      ++ G RNG DISS+SSI ENKG+ +F SE+E+SI EL+D+ QLNEVTPIFDV+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+ +IEVI+R S GIPMKYCHVEHGRVCFFS DKV+LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

KAG7028441.1 tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma]3.4e-7760.9Show/hide
Query:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQDI++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGK+ CIWE+FEV          +G      ++ G RNG DISS+SSI ENKG+ +F SE+E+SI EL+D+ QLNEVTPIFDV+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+ +IEVI+R S GIPMKYCHVEHGRVCFFS DKV+LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

XP_022156818.1 uncharacterized protein LOC111023660 [Momordica charantia]4.0e-7860.53Show/hide
Query:  MEPTDWESSL-GASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWESS  GASGDD+IYEQD+ DEEECLC+ G MRKLQFR                                            FL+EVGALHLLD+
Subjt:  MEPTDWESSL-GASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGKNGC+WE+FEV          +G      ++ GVRNG+DIS +SSI EN+GA + ES++ERSISELL S QL++V PIFDVFL
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+K+IE ++RTSRGI +KYCHVEHGRVCFFS DK++LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

XP_022940787.1 tRNA-splicing endonuclease subunit Sen54 [Cucurbita moschata]7.5e-7760.53Show/hide
Query:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQDI++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGK+ CIWE+FEV          +G      ++ G +NG DISS+SSI ENKG+ +F SE+E+SI EL+D+ QLNEVTPIFDV+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+ +IEVI+R S GIPMKYCHVEHGRVCFFS DKV+LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

XP_023538818.1 tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo]1.2e-7761.28Show/hide
Query:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQDI++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGK+ CIWE+FEV          +G      ++ G RNG DISSRSSI ENKG+ +F SE+E+SI EL+D+ QLNEVTPIFDV+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+ +IEVI+R S GIPMKYCHVEHGRVCFFS DKV+LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

TrEMBL top hitse value%identityAlignment
A0A6J1DRN3 uncharacterized protein LOC1110236601.9e-7860.53Show/hide
Query:  MEPTDWESSL-GASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWESS  GASGDD+IYEQD+ DEEECLC+ G MRKLQFR                                            FL+EVGALHLLD+
Subjt:  MEPTDWESSL-GASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGKNGC+WE+FEV          +G      ++ GVRNG+DIS +SSI EN+GA + ES++ERSISELL S QL++V PIFDVFL
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+K+IE ++RTSRGI +KYCHVEHGRVCFFS DK++LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

A0A6J1FKK4 tRNA-splicing endonuclease subunit Sen543.7e-7760.53Show/hide
Query:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQDI++EEECLCS G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGK+ CIWE+FEV          +G      ++ G +NG DISS+SSI ENKG+ +F SE+E+SI EL+D+ QLNEVTPIFDV+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+ +IEVI+R S GIPMKYCHVEHGRVCFFS DKV+LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

A0A6J1I794 tRNA-splicing endonuclease subunit Sen54 isoform X11.8e-7660.9Show/hide
Query:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQDI++EEECL S G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGK+ CIWE+FEV          +G      ++ G RNG DISSRSSI ENKG+ +FESE+E+SI ELL++ QLNE+TPIFDV+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+ +IEVI+R S GIPMKYCHVEHGRVCFFS DKV LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

A0A6J1I8D9 tRNA-splicing endonuclease subunit Sen54 isoform X31.8e-7660.9Show/hide
Query:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQDI++EEECL S G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGK+ CIWE+FEV          +G      ++ G RNG DISSRSSI ENKG+ +FESE+E+SI ELL++ QLNE+TPIFDV+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+ +IEVI+R S GIPMKYCHVEHGRVCFFS DKV LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

A0A6J1ICR8 tRNA-splicing endonuclease subunit Sen54 isoform X21.8e-7660.9Show/hide
Query:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY
        ME TDWE SS GAS DDD +EQDI++EEECL S G MRKLQFR                                            FLIEVGALHLLD+
Subjt:  MEPTDWE-SSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFR--------------------------------------------FLIEVGALHLLDY

Query:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL
        DN +LSLKDVYKKVAEGK+ CIWE+FEV          +G      ++ G RNG DISSRSSI ENKG+ +FESE+E+SI ELL++ QLNE+TPIFDV+L
Subjt:  DNLNLSLKDVYKKVAEGKNGCIWEEFEV----------IGTS----NILGVRNGNDISSRSSIFENKGAINFESENERSISELLDSTQLNEVTPIFDVFL

Query:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP
        PHSKFRKSSP DPNFMVCLTRGYPPP+ +IEVI+R S GIPMKYCHVEHGRVCFFS DKV LPVLP
Subjt:  PHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G02370.1 unknown protein3.2e-1738.17Show/hide
Query:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEEFEVI----GTSNILGVRNGNDISSRSSI-------FENKGAINFESENERSISELLDSTQL
        +L E+G L LL D D++ +SLKD+Y ++AEGK GC WE +EV     G   ILG R+G   +++ ++        E+  A  F  + + S+++LL    +
Subjt:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEEFEVI----GTSNILGVRNGNDISSRSSI-------FENKGAINFESENERSISELLDSTQL

Query:  NEVTPIFDVFLPHSKFRKSSPADPNFMVCLT
         +  P+FDV+LP+S+F+KSSP +P+F+ C +
Subjt:  NEVTPIFDVFLPHSKFRKSSPADPNFMVCLT

AT3G02370.2 unknown protein4.5e-1937.32Show/hide
Query:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEEFEVI----GTSNILGVRNGNDISSRSSI-------FENKGAINFESENERSISELLDSTQL
        +L E+G L LL D D++ +SLKD+Y ++AEGK GC WE +EV     G   ILG R+G   +++ ++        E+  A  F  + + S+++LL    +
Subjt:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEEFEVI----GTSNILGVRNGNDISSRSSI-------FENKGAINFESENERSISELLDSTQL

Query:  NEVTPIFDVFLPHSKFRKSSPADPNFMVCLTRGYPPPRKNIE
         +  P+FDV+LP+S+F+KSSP +P+F+ C +   PP ++ I+
Subjt:  NEVTPIFDVFLPHSKFRKSSPADPNFMVCLTRGYPPPRKNIE

AT3G57360.1 unknown protein2.6e-2736.78Show/hide
Query:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEEFEVI----GTSNILGVRNG-----NDISSRSSIFENKGAINFESENERSISELLDSTQLNE
        +L E+G L +L + D++ + LKD+Y+K+AE K+GC WE +EV     G   ILG R+G      D +  +   E+  A    ++N+ ++++LL   Q+ +
Subjt:  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEEFEVI----GTSNILGVRNG-----NDISSRSSIFENKGAINFESENERSISELLDSTQLNE

Query:  VTPIFDVFLPHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVL
           +FDV+LP+S+F+KSSP +P+F+ C +   PP +++I+V+ +     P+ +CH+  GR  FFS   +DLPVL
Subjt:  VTPIFDVFLPHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCTACGGATTGGGAAAGCTCTTTAGGAGCTAGTGGCGATGACGACATTTACGAGCAAGACATAAGAGATGAAGAAGAATGTCTTTGTTCATTTGGGTACATGCG
CAAGTTGCAATTCAGATTTCTTATTGAAGTTGGGGCCTTGCATCTTCTTGATTATGATAATTTAAATCTTTCTTTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAA
ATGGATGTATTTGGGAGGAGTTTGAGGTTATAGGCACCTCAAATATCTTGGGTGTTAGGAATGGAAATGACATTTCTTCTCGAAGTTCTATATTTGAGAACAAAGGAGCG
ATAAATTTTGAATCAGAAAATGAGAGGTCGATCTCTGAGCTATTAGATTCCACTCAACTCAATGAAGTGACACCCATTTTTGATGTTTTTCTTCCACATAGCAAGTTTAG
AAAATCTTCTCCTGCTGACCCAAATTTTATGGTCTGCTTGACTAGGGGGTACCCACCTCCAAGAAAAAATATTGAAGTTATTGATAGAACATCGAGAGGCATTCCAATGA
AATATTGTCATGTTGAACATGGACGTGTTTGTTTCTTCTCACTTGATAAGGTGGACTTGCCCGTCTTACCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCTACGGATTGGGAAAGCTCTTTAGGAGCTAGTGGCGATGACGACATTTACGAGCAAGACATAAGAGATGAAGAAGAATGTCTTTGTTCATTTGGGTACATGCG
CAAGTTGCAATTCAGATTTCTTATTGAAGTTGGGGCCTTGCATCTTCTTGATTATGATAATTTAAATCTTTCTTTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAA
ATGGATGTATTTGGGAGGAGTTTGAGGTTATAGGCACCTCAAATATCTTGGGTGTTAGGAATGGAAATGACATTTCTTCTCGAAGTTCTATATTTGAGAACAAAGGAGCG
ATAAATTTTGAATCAGAAAATGAGAGGTCGATCTCTGAGCTATTAGATTCCACTCAACTCAATGAAGTGACACCCATTTTTGATGTTTTTCTTCCACATAGCAAGTTTAG
AAAATCTTCTCCTGCTGACCCAAATTTTATGGTCTGCTTGACTAGGGGGTACCCACCTCCAAGAAAAAATATTGAAGTTATTGATAGAACATCGAGAGGCATTCCAATGA
AATATTGTCATGTTGAACATGGACGTGTTTGTTTCTTCTCACTTGATAAGGTGGACTTGCCCGTCTTACCGTGA
Protein sequenceShow/hide protein sequence
MEPTDWESSLGASGDDDIYEQDIRDEEECLCSFGYMRKLQFRFLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNGCIWEEFEVIGTSNILGVRNGNDISSRSSIFENKGA
INFESENERSISELLDSTQLNEVTPIFDVFLPHSKFRKSSPADPNFMVCLTRGYPPPRKNIEVIDRTSRGIPMKYCHVEHGRVCFFSLDKVDLPVLP