; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0021624 (gene) of Snake gourd v1 genome

Gene IDTan0021624
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUbiquitin
Genome locationLG07:8930123..8931677
RNA-Seq ExpressionTan0021624
SyntenyTan0021624
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0019941 - modification-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0031386 - protein tag (molecular function)
GO:0031625 - ubiquitin protein ligase binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR038587 - Ribosomal protein L40e superfamily
IPR029071 - Ubiquitin-like domain superfamily
IPR019956 - Ubiquitin domain
IPR000626 - Ubiquitin-like domain
IPR001975 - Ribosomal protein L40e
IPR011332 - Zinc-binding ribosomal protein
IPR019954 - Ubiquitin conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF1815065.1 unnamed protein product [Brassica napus]3.8e-6192.54Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVNDIVNTSIDFILC
        ARLHPRAVNCRKKKCGHSNQV   +  S+ F  C
Subjt:  ARLHPRAVNCRKKKCGHSNQVNDIVNTSIDFILC

KAA8516754.1 hypothetical protein F0562_017048 [Nyssa sinensis]3.8e-6196.8Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVNDIV
        ARLHPRAVNCRKKKCGHSNQV+ ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVNDIV

KAF3671910.1 Ubiquitin-60S ribosomal protein L40-1 [Capsicum annuum]9.9e-6295.31Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVNDIVNTS
        ARLHPRAVNCRKKKCGHSNQV ++ + S
Subjt:  ARLHPRAVNCRKKKCGHSNQVNDIVNTS

KAF9601361.1 hypothetical protein IFM89_019093 [Coptis chinensis]4.9e-6191.73Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVNDIVNTSIDFIL
        ARLHPRAVNCRKKKCGHSNQV  ++   I +++
Subjt:  ARLHPRAVNCRKKKCGHSNQVNDIVNTSIDFIL

KAG4393946.1 hypothetical protein GLYMA_03G197600v4 [Glycine max]4.9e-6193.18Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVNDIVNTSIDFI
        ARLHPRAVNCRKKKCGHSNQV       +DF+
Subjt:  ARLHPRAVNCRKKKCGHSNQVNDIVNTSIDFI

TrEMBL top hitse value%identityAlignment
A0A2G5CUA0 Ubiquitin4.0e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

A0A4D8YPT6 Ubiquitin1.1e-6190.65Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV-----NDIVNTSIDFILC
        ARLHPRAVNCRKKKCGHSNQV      D V+  ID + C
Subjt:  ARLHPRAVNCRKKKCGHSNQV-----NDIVNTSIDFILC

A0A5J4ZFZ4 Ubiquitin1.8e-6196.8Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVNDIV
        ARLHPRAVNCRKKKCGHSNQV+ ++
Subjt:  ARLHPRAVNCRKKKCGHSNQVNDIV

I1KAY5 Ubiquitin4.0e-61100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQV
Subjt:  ARLHPRAVNCRKKKCGHSNQV

M1A5A2 Ubiquitin1.8e-6198.39Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQ+KMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQVNDI
        ARLHPRAVNCRKKKCGHSNQVN I
Subjt:  ARLHPRAVNCRKKKCGHSNQVNDI

SwissProt top hitse value%identityAlignment
B9DHA6 Ubiquitin-60S ribosomal protein L40-19.3e-6398.35Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQ+
Subjt:  ARLHPRAVNCRKKKCGHSNQV

P0CH34 Ubiquitin-60S ribosomal protein L40-19.3e-6398.35Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQ+
Subjt:  ARLHPRAVNCRKKKCGHSNQV

P0CH35 Ubiquitin-60S ribosomal protein L40-29.3e-6398.35Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQ+
Subjt:  ARLHPRAVNCRKKKCGHSNQV

P49636 Ubiquitin-60S ribosomal protein L405.4e-6398.35Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCR+KKCGHSNQ+
Subjt:  ARLHPRAVNCRKKKCGHSNQV

Q42202 Ubiquitin-60S ribosomal protein L40-29.3e-6398.35Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQ+
Subjt:  ARLHPRAVNCRKKKCGHSNQV

Arabidopsis top hitse value%identityAlignment
AT1G65350.1 ubiquitin 131.2e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT2G36170.1 Ubiquitin supergroup;Ribosomal protein L40e6.6e-6498.35Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQ+
Subjt:  ARLHPRAVNCRKKKCGHSNQV

AT3G52590.1 ubiquitin extension protein 16.6e-6498.35Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQV
        ARLHPRAVNCRKKKCGHSNQ+
Subjt:  ARLHPRAVNCRKKKCGHSNQV

AT4G02890.1 Ubiquitin family protein1.2e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT4G05320.2 polyubiquitin 101.2e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTCGAGTCCAGCGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCC
CCCCGACCAGCAACGGCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACACTAGCTGACTACAACATCCAGAAAGAATCAACGCTTCATTTGGTTCTAAGGCTTC
GTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAACCAGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGT
CGGAAAAAGAAATGTGGACACAGCAATCAGGTAAATGATATTGTCAATACGTCGATTGATTTCATTCTTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTCGAGTCCAGCGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCC
CCCCGACCAGCAACGGCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACACTAGCTGACTACAACATCCAGAAAGAATCAACGCTTCATTTGGTTCTAAGGCTTC
GTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAACCAGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGT
CGGAAAAAGAAATGTGGACACAGCAATCAGGTAAATGATATTGTCAATACGTCGATTGATTTCATTCTTTGCTAA
Protein sequenceShow/hide protein sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNC
RKKKCGHSNQVNDIVNTSIDFILC