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Tan0021669 (gene) of Snake gourd v1 genome

Gene IDTan0021669
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationLG03:80149811..80150467
RNA-Seq ExpressionTan0021669
SyntenyTan0021669
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]4.7e-5488.89Show/hide
Query:  TATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLR
        T T E  +KLQNI SFKLSRYSS ARDSD GDDLRYTSLKDILLNSPSYS V++FNEFN+SNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLR
Subjt:  TATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLR

Query:  IKLAALRSRWCDCFHHIFGFFTFALD
        IKLAALRSRWCDCFH IFGFF+FALD
Subjt:  IKLAALRSRWCDCFHHIFGFFTFALD

KAG6594453.1 hypothetical protein SDJN03_11006, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5768.06Show/hide
Query:  MKTVNSQNHPWPQKSQSAESISYFHNKIGSKSPSSIDGYNPISKI---LIMNLTTMDN---PSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLR
        MKT NS NHPWPQ   +           GSKS +S +GYNPIS +   LI+N TTMD+   P PT  T    NKL N+SS KLSR+SS  RDSD  DDLR
Subjt:  MKTVNSQNHPWPQKSQSAESISYFHNKIGSKSPSSIDGYNPISKI---LIMNLTTMDN---PSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLR

Query:  YTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFALD
        YTSLKD+LLNSPSYS V++FNEF++ NISIRNELVKRAASAYLQSAA LVSRNES  VGFW RLRIKLAALRSRWC+ FH+IFGFFTFALD
Subjt:  YTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFALD

KAG7026453.1 50S ribosomal protein HLP, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-5273.01Show/hide
Query:  GSKSPSSIDGYNPISKI---LIMNLTTMDN---PSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNI
        GSKS +S +GYNPIS +   LI+N TTMD+   P PT  T    NKL N+SS KLSR+SS  RDSD  DDLRYTSLKD+LLNSPSYS V++FNEF++ NI
Subjt:  GSKSPSSIDGYNPISKI---LIMNLTTMDN---PSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNI

Query:  SIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFALD
        SIRNELVKRAASAYLQSAA LVSRNES  VGFW RLRIKLAALRSRWC+ FH+IFGFFTFALD
Subjt:  SIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFALD

XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]4.6e-4981.48Show/hide
Query:  MNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRN
        MNLTT     PTTA  + H KLQN+ SFKLSRYSS  RDSD GDDLRYTSLKDILLNSPSYS V+EFNEFN SNI+IRNELVKRAASAYLQSAAILV RN
Subjt:  MNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRN

Query:  ESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTF
        ES FVGFWERLRIKLAALRSRWCDCF   FGFF F
Subjt:  ESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTF

XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]5.2e-5368.31Show/hide
Query:  SQNHPWPQK--SQSAESISYFHNKIGSKSPS---SIDGYNPISKILIMNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKD
        +   P+P K  ++S  +  + HNK  ++ P     ++G+NPIS   IMNLTT     PTTA  + H KLQN+ SFKLSRYSS  RDSD GDDLRYTSLKD
Subjt:  SQNHPWPQK--SQSAESISYFHNKIGSKSPS---SIDGYNPISKILIMNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKD

Query:  ILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFA
        ILLNSPSYS V+EFNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF   FGFF FA
Subjt:  ILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFA

TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein2.5e-5382.61Show/hide
Query:  MNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRN
        MNLT        T T E  ++LQNI SFKLSRYSS ARDSD  DDLRYTSLKDILLNSPSYS V++FNEFN+SNISIRNELVKRAASAYLQSAAILVSRN
Subjt:  MNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRN

Query:  ESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFALD
        ESGFVGFWERLRIKLAALRSRWCDCFH IFGFF+FALD
Subjt:  ESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFALD

A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A2.3e-5488.89Show/hide
Query:  TATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLR
        T T E  +KLQNI SFKLSRYSS ARDSD GDDLRYTSLKDILLNSPSYS V++FNEFN+SNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLR
Subjt:  TATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLR

Query:  IKLAALRSRWCDCFHHIFGFFTFALD
        IKLAALRSRWCDCFH IFGFF+FALD
Subjt:  IKLAALRSRWCDCFHHIFGFFTFALD

A0A6J1CYB8 uncharacterized protein LOC1110157121.6e-3985.05Show/hide
Query:  TAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIK
        T    +KLQNI SFKLSRYSSGARDSD GDDLRY SLKDILLNSPSYS V++FN+FN+SNISIRNELVKRAASAYLQSAAILVSRNES FV FWERLR K
Subjt:  TAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIK

Query:  LAALRSR
        LAALRSR
Subjt:  LAALRSR

A0A6J1EJR7 uncharacterized protein LOC1114332382.2e-4981.48Show/hide
Query:  MNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRN
        MNLTT     PTTA  + H KLQN+ SFKLSRYSS  RDSD GDDLRYTSLKDILLNSPSYS V+EFNEFN SNI+IRNELVKRAASAYLQSAAILV RN
Subjt:  MNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRN

Query:  ESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTF
        ES FVGFWERLRIKLAALRSRWCDCF   FGFF F
Subjt:  ESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTF

A0A6J1ISV4 uncharacterized protein LOC1114781152.9e-4980.15Show/hide
Query:  MNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRN
        MNLTT       TAT +  +KLQN+ SFKLSRYSS  RDSD GDDLRYTSLKDILLNSPSYS V+EFNEFN SNI+IRNELVKRAASAYLQSAAILV RN
Subjt:  MNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSSVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRN

Query:  ESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFA
        ES FVGFWERLRIKLAALRSRWCDCF   FGFF FA
Subjt:  ESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18395.1 unknown protein2.1e-0740.24Show/hide
Query:  DSDPGDDLRYTSLKDILLNS---------PSYSSVSE----FNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
        D +  ++L+YTSLKD++ +S         P YS  S+     +E ++SNI+I NELVKRAAS Y+QS+ I+++ + + F  F
Subjt:  DSDPGDDLRYTSLKDILLNS---------PSYSSVSE----FNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF

AT5G06280.1 unknown protein2.1e-0439.29Show/hide
Query:  PGDDLRYTSLKDIL-------LNSPSYS-SVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA
        P   + YTSL+DI+       LN PS + S S        +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ + L+A
Subjt:  PGDDLRYTSLKDIL-------LNSPSYS-SVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA

AT5G06280.3 unknown protein2.1e-0439.29Show/hide
Query:  PGDDLRYTSLKDIL-------LNSPSYS-SVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA
        P   + YTSL+DI+       LN PS + S S        +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ + L+A
Subjt:  PGDDLRYTSLKDIL-------LNSPSYS-SVSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCGTAAACTCCCAAAACCATCCATGGCCCCAAAAATCCCAATCGGCCGAGTCAATTTCCTACTTCCATAACAAAATTGGGTCCAAATCCCCAAGCTCTATTGA
TGGCTACAATCCCATTTCGAAGATTTTGATTATGAATCTCACAACAATGGACAACCCATCACCAACAACTGCAACAGCAGAGGCTCATAATAAGCTTCAGAATATATCCT
CTTTCAAGCTCTCCCGGTACTCCTCCGGCGCCCGAGATTCCGACCCCGGCGATGACCTCCGGTACACCAGCCTGAAGGATATTCTTCTGAACTCCCCCTCGTACAGCAGC
GTAAGTGAGTTCAATGAGTTCAATACCTCGAACATTTCCATCCGAAACGAGCTGGTGAAACGGGCAGCGTCGGCGTACCTTCAATCGGCGGCCATTTTGGTCAGCCGGAA
TGAGAGCGGTTTCGTGGGATTCTGGGAGAGGCTTCGGATCAAACTCGCCGCCCTCCGTTCCCGCTGGTGCGATTGTTTTCACCATATTTTTGGCTTCTTTACTTTTGCCC
TAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACCGTAAACTCCCAAAACCATCCATGGCCCCAAAAATCCCAATCGGCCGAGTCAATTTCCTACTTCCATAACAAAATTGGGTCCAAATCCCCAAGCTCTATTGA
TGGCTACAATCCCATTTCGAAGATTTTGATTATGAATCTCACAACAATGGACAACCCATCACCAACAACTGCAACAGCAGAGGCTCATAATAAGCTTCAGAATATATCCT
CTTTCAAGCTCTCCCGGTACTCCTCCGGCGCCCGAGATTCCGACCCCGGCGATGACCTCCGGTACACCAGCCTGAAGGATATTCTTCTGAACTCCCCCTCGTACAGCAGC
GTAAGTGAGTTCAATGAGTTCAATACCTCGAACATTTCCATCCGAAACGAGCTGGTGAAACGGGCAGCGTCGGCGTACCTTCAATCGGCGGCCATTTTGGTCAGCCGGAA
TGAGAGCGGTTTCGTGGGATTCTGGGAGAGGCTTCGGATCAAACTCGCCGCCCTCCGTTCCCGCTGGTGCGATTGTTTTCACCATATTTTTGGCTTCTTTACTTTTGCCC
TAGACTGA
Protein sequenceShow/hide protein sequence
MKTVNSQNHPWPQKSQSAESISYFHNKIGSKSPSSIDGYNPISKILIMNLTTMDNPSPTTATAEAHNKLQNISSFKLSRYSSGARDSDPGDDLRYTSLKDILLNSPSYSS
VSEFNEFNTSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCFHHIFGFFTFALD