; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0021693 (gene) of Snake gourd v1 genome

Gene IDTan0021693
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-type domain-containing protein
Genome locationLG01:15880107..15880328
RNA-Seq ExpressionTan0021693
SyntenyTan0021693
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577374.1 RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]8.1e-2672.6Show/hide
Query:  MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        +AMEKLTKPS +YDY++++E+ S  S+CAICLEEF +   CRVFPNCKHMFHTHCI+ WLGINQTCP+CRTQL
Subjt:  MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

KAG6600728.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]4.5e-2476.71Show/hide
Query:  MEKLTKPSVDYDYDEND--ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        MEKLT P VDY   END   ++SE +ECAICLE FG+RVSCRVFPNCKHMFHTHCII WLGIN TCPICRT L
Subjt:  MEKLTKPSVDYDYDEND--ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

KAG7031368.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-2476.71Show/hide
Query:  MEKLTKPSVDYDYDEND--ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        MEKLT P VDY   END   ++SE +ECAICLE FG+RVSCRVFPNCKHMFHTHCII WLGIN TCPICRT L
Subjt:  MEKLTKPSVDYDYDEND--ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

XP_011652743.1 uncharacterized protein LOC105435076 [Cucumis sativus]9.6e-2778.08Show/hide
Query:  MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        MAMEKLTKPS  Y+ +ENDES S  SEC ICLE+ G+RVSCRVFPNCKH+FHTHCII+WL INQTCPICRT+L
Subjt:  MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

XP_023545744.1 RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]2.6e-2477.03Show/hide
Query:  AMEKLTKPSVDYDYDENDEST--SETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        AMEKLT P VDY   END     SE +ECAICLE FG+RVSCRVFPNCKHMFHTHCII WLGIN TCPICRT L
Subjt:  AMEKLTKPSVDYDYDENDEST--SETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

TrEMBL top hitse value%identityAlignment
A0A0A0L7Y8 RING-type domain-containing protein3.7e-2477.94Show/hide
Query:  MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPI
        MAMEKLTKPS  Y+ +ENDES S  SEC ICLE+ G+RVSCRVFPNCKH+FHTHCII+WL INQTCPI
Subjt:  MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPI

A0A2I0VD18 RING-H2 finger protein ATL321.2e-1149.23Show/hide
Query:  PSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        PS+ YD +E+ +   + S CAICLE+F D   CR  P C H+FH HC+  WL    TCPICRT +
Subjt:  PSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

A0A444Y4D6 RING-type domain-containing protein3.6e-1156.14Show/hide
Query:  YDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRT
        Y  +D + S   ECAICLE+F D   C+VFP CKHM+H++CI +WL  N TCPICR+
Subjt:  YDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRT

A0A444Y4F4 RING-type domain-containing protein2.7e-1154.39Show/hide
Query:  YDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRT
        Y  +D + S   ECAIC+E+F D   C+VFP CKHM+H++CI +WL  N TCPICR+
Subjt:  YDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRT

A0A6P4BX25 E3 ubiquitin-protein ligase RING1-like2.1e-1154.39Show/hide
Query:  YDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRT
        Y  +D + S   ECAIC+E+F D   C+VFP CKHM+H++CI +WL  N TCPICR+
Subjt:  YDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRT

SwissProt top hitse value%identityAlignment
Q8LF65 RING-H2 finger protein ATL179.1e-1255.32Show/hide
Query:  ECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        EC++CL EF D  S RV PNCKH FH HCI  W   + +CP+CR+Q+
Subjt:  ECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

Q8LGA5 E3 ubiquitin-protein ligase ATL311.0e-1044.78Show/hide
Query:  TKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        T P+  Y   +  +      ECAICL EF D  + R+ P C H+FH HCI +WL  + TCP+CRT L
Subjt:  TKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

Q8RXX9 E3 ubiquitin-protein ligase ATL65.9e-1155.32Show/hide
Query:  ECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        ECAICL EF D  + R+ P C H+FH HCI +WL  + TCP+CR  L
Subjt:  ECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

Q9C919 Putative RING-H2 finger protein ATL191.0e-1045Show/hide
Query:  DYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        +++E++E + E+ ECAICL  +     CRVFP C+H++H  CI +WL  + TCP CR  L
Subjt:  DYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

Q9LSW9 RING-H2 finger protein ATL161.5e-1142.65Show/hide
Query:  YDEND---------ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        YD+ND         E    + EC++CL EF D    R+ PNC H+FH  CI  WL  N  CP+CRT++
Subjt:  YDEND---------ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

Arabidopsis top hitse value%identityAlignment
AT1G53010.1 RING/U-box superfamily protein7.1e-1245Show/hide
Query:  DYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        +++E++E + E+ ECAICL  +     CRVFP C+H++H  CI +WL  + TCP CR  L
Subjt:  DYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

AT3G05200.1 RING/U-box superfamily protein4.2e-1255.32Show/hide
Query:  ECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        ECAICL EF D  + R+ P C H+FH HCI +WL  + TCP+CR  L
Subjt:  ECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein1.2e-1149.06Show/hide
Query:  STSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        S  +  +CA+CL EF D    R+ P C H FH HCI +WL  N TCP+CR  L
Subjt:  STSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

AT5G27420.1 carbon/nitrogen insensitive 17.1e-1244.78Show/hide
Query:  TKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        T P+  Y   +  +      ECAICL EF D  + R+ P C H+FH HCI +WL  + TCP+CRT L
Subjt:  TKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

AT5G43420.1 RING/U-box superfamily protein1.1e-1242.65Show/hide
Query:  YDEND---------ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL
        YD+ND         E    + EC++CL EF D    R+ PNC H+FH  CI  WL  N  CP+CRT++
Subjt:  YDEND---------ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGGAGAAATTGACGAAGCCATCGGTAGATTATGATTACGATGAGAATGACGAATCGACATCGGAGACGAGTGAATGTGCGATATGTTTGGAGGAGTTTGGGGA
TAGAGTTTCATGCCGAGTTTTTCCCAATTGCAAGCATATGTTTCATACGCATTGCATAATCAGTTGGTTAGGGATTAATCAAACATGTCCCATATGTAGGACTCAATTGT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGCGATGGAGAAATTGACGAAGCCATCGGTAGATTATGATTACGATGAGAATGACGAATCGACATCGGAGACGAGTGAATGTGCGATATGTTTGGAGGAGTTTGGGGA
TAGAGTTTCATGCCGAGTTTTTCCCAATTGCAAGCATATGTTTCATACGCATTGCATAATCAGTTGGTTAGGGATTAATCAAACATGTCCCATATGTAGGACTCAATTGT
AG
Protein sequenceShow/hide protein sequence
MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL